Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq214244 111 4e-19 seq172867 111 4e-19 seq248150 107 4e-18 seq177818 102 2e-16 seq244327 96.9 8e-15 seq158858 93.3 1e-13 seq56932 87.8 4e-12 seq26767 84.2 5e-11 >seq214244 Length=1107 Score = 111 bits (122), Expect = 4e-19 Identities = 198/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 133903 ATTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACT 133962 ||| ||||| |||| ||||| || | | | || || ||||||||||| ||| | Sbjct 416 ATTAAAAAAAGATCCAGATTCCCGTAGAATTTTAGTATCTAGTTGGAATGTTGGAGAAAT 357 Query 133963 AGATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAA 134022 | ||||||| || ||||| |||||| || ||| || | || | || || Sbjct 356 TAACAAAATGAAATTACCACCTTGTCATATATTATTTCAGTTTTATGTTTTTAACAAAAA 297 Query 134023 GTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACAT 134082 ||| ||| || || |||||| |||||| |||| | ||| |||| || || || Sbjct 296 ATTAAGTTGTCAACTTTACCAACGTTCTTGTGATGTATTTCTTGGATTACCTTTTAATAT 237 Query 134083 TGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGA 134142 ||| ||| || |||| | ||||||| |||||||| |||| ||||||||||| || Sbjct 236 AGCTAGTTATGCAATACTTATTCATATGATAGCACAACAATGTGATTTAGAAGTTGGAGA 177 Query 134143 GTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAA 134191 ||| |||||| || || ||||| || | ||||| |||||| | ||| Sbjct 176 ATTTTTATGGACAGGAGGTGATGTCCATCTATATAATAATCACATTGAA 128 >seq172867 Length=19976 Score = 111 bits (122), Expect = 4e-19 Identities = 202/289 (70%), Gaps = 9/289 (3%) Strand=Plus/Plus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 ||||||||| | | ||| || || ||| | |||| | || |||||||| ||||| || Sbjct 15996 GATTCTTTCGAGAAGAACAAAGAACAATCCGGTGTTAATCGGAGAACCAGGAGTTGGGAA 16055 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | ||||| || ||||||||| | || | || || ||||||||| | | | Sbjct 16056 AACAGCCGTTGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTTCCAAACAGTCT 16115 Query 150484 GAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542 | ||||| || ||| |||||||| | ||||||||||| ||||||| ||||||| | Sbjct 16116 TACTGATGT-GAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCTGGTGCTAAGTACC 16174 Query 150543 GTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGA-ACGCGATG 150599 | || || || |||||| | || | | ||| | ||||| | |||| | | | | Sbjct 16175 GAGGAGAGTTTGAAGAAAGATTGAAAGCTGTTT--TGAAAGAAGTTGAAGATGCTCAAGG 16232 Query 150600 --ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGT 150646 | || ||||| ||||| ||||| || ||| || | ||||||||| Sbjct 16233 CAAAGTGATTCTCTTCATTGATGAGATTCATTTGGTTCTTGGTGCTGGT 16281 >seq248150 Length=2497 Score = 107 bits (118), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 324510 TATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTT 324569 |||||||||| ||||||||||||| |||||| |||||||||||| || |||||||||||| Sbjct 197 TATATGGGGCCATAGCTCAGTTGGTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTT 256 Query 324570 CGAACCCGTTTAGCTCCAC 324588 ||| |||||| ||||||| Sbjct 257 CGACTCCGTTTGGCTCCAC 275 >seq177818 Length=7968 Score = 102 bits (112), Expect = 2e-16 Identities = 281/417 (67%), Gaps = 18/417 (4%) Strand=Plus/Plus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGT 150421 ||||||||| | | ||| || || ||| ||||| ||| | || || ||||| ||||| Sbjct 4289 GATTCTTTCAAGAAGAACTAAGAACAATCCGGTGC-TTA-TCGGAGAGCCAGGAGTTGGG 4346 Query 150422 AAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCT 150481 ||||| | ||||| || ||||| ||| | || | || || ||||||||| | | Sbjct 4347 AAAACTGCTGTTGTTGAAGGTTTAGCTCAAAGGATTGTGAAAGGAGATGTTCCAAACAGT 4406 Query 150482 ATGAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTA 150540 | | ||||| || ||| |||||||| | |||||||| || |||||| |||| || Sbjct 4407 CTTACTGATGT-GAGATTGATTTCTTTGGACATGGGTGCTTTAGTTGCTGGGGCTAAATA 4465 Query 150541 TCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTAC--AAGAACTAAAAGAACGCGAT 150598 | || || || |||||| | | || ||| || | ||||| | ||||| || Sbjct 4466 CAGAGGAGAGTTTGAAGAAAGATT-GA-AATCTGTTTTGAAAGAAGTTGAAGAAGCTGAA 4523 Query 150599 G---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGC 150655 | | || ||||| ||||| ||||| || ||| || | ||||||||| |||| Sbjct 4524 GGGAAAGTGATTCTCTTCATTGATGAGATTCATTTGGTTCTTGGTGCTGGTAAAACTGAA 4583 Query 150656 GGCGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG 150714 || || ||||| ||| ||| |||| || ||| || || | ||| | |||| Sbjct 4584 GGG---TCGATGGATGC-AGCGAATCTGTTCAAGCCTATGTTAGCTAGAGGTCAGCTTCG 4639 Query 150715 TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 ||| ||||| ||||| || || ||| | ||| || |||| ||||||||||| Sbjct 4640 ATGCATTGGTGCTACAACACTTGAAGAGTATAGGAAATACGTTGAGAAAGATGCAGC 4696 >seq244327 Length=1302 Score = 96.9 bits (106), Expect = 8e-15 Identities = 397/612 (65%), Gaps = 13/612 (2%) Strand=Plus/Minus Query 227028 TTTCTTCTGGACACCTGATGAGGTAGATTTATCTAAAGACCGAATAGATTTTAAATCACT 227087 ||| || |||| |||||| || ||||| | ||| ||| ||||||||||| || | | Sbjct 1088 TTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAA-AATT 1030 Query 227088 TACC-GATCACGAGAAGCACATATTTACTTCCAATCTAAAACGGCAAATTTTATTAGATT 227146 |||| || || || || || || ||| | ||| ||||| |||| |||||||| | Sbjct 1029 TACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACT 970 Query 227147 CTGTTCAAGGTAGGGGTCCAAATTTAGTACTGTTGCCATATGCATCATTACCAGAACTTG 227206 || ||||||| || |||| || | | | | ||| | || | || ||| | | Sbjct 969 CTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAG 910 Query 227207 AAAATTTTATTGAAACATGGTCATTTTTTGAAGGTTCTATACATAGTAAATCATATACAC 227266 ||| | |||||||||||||| |||| ||| |||| || || ||||| | Sbjct 909 AAACCTGGATTGAAACATGGTCTTTTTCGGAA---ACTATTCACTCACGTTCTTATACTC 853 Query 227267 ATATTATTCGAAATATATATCCAAAC-CCAAGTGAAGTTTTTGATACTATGTTGGATATT 227325 |||||||| ||||||| | | | | ||| | | | |||||| ||| | | | Sbjct 852 ATATTATTAGAAATAT-TGTTAATTCTCCATCTTTAATATTTGATGATATTATTTCCAAT 794 Query 227326 CCAGAAATTACATCAT-GTGCAACTGATATTTCAAAATATTATGATGATTTAGATAACTA 227384 | | |||| | || | || | |||||| | ||| ||||| || ||| |||| | Sbjct 793 AAACATATTA-ACGATCGAGCTAAAAATATTTGCATATACTATGACGAATTA-ATAAAAA 736 Query 227385 -TGGAACTTATTATAAGTTATTGGGTGAAGGCACTCACACCGTTAATGGTGAAAAAATTG 227443 | | ||||| | ||||| |||||||| | || || || || |||| ||| Sbjct 735 TTACTAGTTATTGGCATTTATTCGGTGAAGGTATACATTTGGTAAAAGGAAAAAATATTA 676 Query 227444 TTGTTGATATGTATGAGCTAAAGAAAAAACTATGGCTATGTATTAACAGTATTAATATTC 227503 || | | | ||| || |||||| ||| ||||| | | ||| ||||| | Sbjct 675 ACATTACTTTAAGTTTGCTTAAAAAAAAATTATACCTATGCTTAATAAGTGTTAATGTAT 616 Query 227504 TAGAAGGTATTCGTTTTTATGTTTCATTTGCGTGTTCCTGGGCATACGCCGAGA-ACAAT 227562 |||||| ||| | ||||||||| ||||| ||||| | || | || || | | ||| Sbjct 615 TAGAAGCAATTAGATTTTATGTTAGTTTTGCATGTTCATTCGCTTTTGCAGAAAGAGAAT 556 Query 227563 CAACTTGAGGGGAATGCTAAAATAATTAGATTGATTTGTAGGGATGAGAATTTGCATTTA 227622 || | || || ||||| ||||| || ||||| || || ||||| |||||| | Sbjct 555 TAA-TGGAAGGTAATGCAAAAATTATAAGATTAATAGCAAGAGATGAAGCATTGCATCTT 497 Query 227623 GCAGCAACTCAA 227634 ||| ||| ||| Sbjct 496 ACAGGAACACAA 485 >seq158858 Length=235449 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 284183 TATGGGGATGTGGTGAAATTGGCAGACACGCCAGATTTAGGTTCTGGTTCTTCGGAGTGC 284242 |||| ||| |||||| ||||||||||||||| ||| ||||| ||| || |||||| ||| Sbjct 161260 TATGCGGACGTGGTGGAATTGGCAGACACGCTAGACTTAGGATCTAGTGCTTCGGCGTGA 161319 Query 284243 GAGTTCGAGTCTCGCCATCCCCACCATATTTGGAGTCTTAC 284283 ||||||||||||| || ||| | | || ||||| |||| Sbjct 161320 GAGTTCGAGTCTCTCCGTCCGTATCTAATGTGGAGGGTTAC 161360 >seq56932 Length=160465 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 284184 ATGGGGATGTGGTGAAATTGGCAGACACGCCAGATTTAGGTTCTGGTTCTTC--GGAGTG 284241 |||||| ||||| | |||||| |||| | ||||||||||||||||| | | || ||| Sbjct 24206 ATGGGGCTGTGGCGGAATTGGTAGACGCACCAGATTTAGGTTCTGGCGCCGCAAGGTGTG 24147 Query 284242 CGAGTTCGAGTCTCGCCATCCCCACCATATTTGGA 284276 ||||||||||||| ||| ||||||||| || ||| Sbjct 24146 AGAGTTCGAGTCTCTCCAGCCCCACCATTTTCGGA 24112 >seq26767 Length=1149 Score = 84.2 bits (92), Expect = 5e-11 Identities = 264/404 (65%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 224383 CCAACTCCAATTATGGCTGGACTACGTACTAACACTCGCCAATTTAGTTCTTGCGTAGTT 224442 || || ||||||||| ||||| | | ||| ||||| |||||||| || || || | Sbjct 440 CCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTA 381 Query 224443 AT-GAACGTTGGTGATAGTCTAGACAGCATTAGTGCTGGTAACAGTGCTATAATGCAGTA 224501 || ||| || | ||||| |||||| |||| ||| || ||| |||| | | || Sbjct 380 ATTGAATGT-GATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATA 322 Query 224502 TATTTCTAAGAAAGCCGGTTTGGGAGTCAACTATGGTCGTGTCCGTGCAGTTGGTTCAGA 224561 | ||||| | ||| || | || | || ||| | |||||||| ||| Sbjct 321 TGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCC 262 Query 224562 AATTCGTGGTGGTGATGCTGTTCATACTGGATTGATTCCATTCCTACACGCAGTTGCTAA 224621 ||| | ||| || || |||||||||| | ||||| || || | || || | || Sbjct 261 TATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTT-TATAAACATTTTCAAA 203 Query 224622 AA-CTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAACAGTCCACTTCC 224680 |||| ||||| ||||||||||| || || | ||||| || ||||| | | | Sbjct 202 GTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATC 143 Query 224681 CATTGTGGCATTACGAGTTTGAAGATCTTGTAGTACTAAAGAATAACAAAGGTACAGAAG 224740 || | ||||||| || ||||| | | |||| |||| ||||| | || | |||| Sbjct 142 CAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAG 83 Query 224741 TATCTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAA 224784 | | | || ||||| | |||||| | |||||||||||| Sbjct 82 AAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAA 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1143661212567544