Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq214244 111 4e-19
seq172867 111 4e-19
seq248150 107 4e-18
seq177818 102 2e-16
seq244327 96.9 8e-15
seq158858 93.3 1e-13
seq56932 87.8 4e-12
seq26767 84.2 5e-11
>seq214244
Length=1107
Score = 111 bits (122), Expect = 4e-19
Identities = 198/289 (69%), Gaps = 0/289 (0%)
Strand=Plus/Minus
Query 133903 ATTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACT 133962
||| ||||| |||| ||||| || | | | || || ||||||||||| ||| |
Sbjct 416 ATTAAAAAAAGATCCAGATTCCCGTAGAATTTTAGTATCTAGTTGGAATGTTGGAGAAAT 357
Query 133963 AGATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAA 134022
| ||||||| || ||||| |||||| || ||| || | || | || ||
Sbjct 356 TAACAAAATGAAATTACCACCTTGTCATATATTATTTCAGTTTTATGTTTTTAACAAAAA 297
Query 134023 GTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACAT 134082
||| ||| || || |||||| |||||| |||| | ||| |||| || || ||
Sbjct 296 ATTAAGTTGTCAACTTTACCAACGTTCTTGTGATGTATTTCTTGGATTACCTTTTAATAT 237
Query 134083 TGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGA 134142
||| ||| || |||| | ||||||| |||||||| |||| ||||||||||| ||
Sbjct 236 AGCTAGTTATGCAATACTTATTCATATGATAGCACAACAATGTGATTTAGAAGTTGGAGA 177
Query 134143 GTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAA 134191
||| |||||| || || ||||| || | ||||| |||||| | |||
Sbjct 176 ATTTTTATGGACAGGAGGTGATGTCCATCTATATAATAATCACATTGAA 128
>seq172867
Length=19976
Score = 111 bits (122), Expect = 4e-19
Identities = 202/289 (70%), Gaps = 9/289 (3%)
Strand=Plus/Plus
Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423
||||||||| | | ||| || || ||| | |||| | || |||||||| ||||| ||
Sbjct 15996 GATTCTTTCGAGAAGAACAAAGAACAATCCGGTGTTAATCGGAGAACCAGGAGTTGGGAA 16055
Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483
|||| | ||||| || ||||||||| | || | || || ||||||||| | | |
Sbjct 16056 AACAGCCGTTGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTTCCAAACAGTCT 16115
Query 150484 GAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542
| ||||| || ||| |||||||| | ||||||||||| ||||||| ||||||| |
Sbjct 16116 TACTGATGT-GAGATTGATTTCTTTGGACATGGGTGCATTAGTTGCTGGTGCTAAGTACC 16174
Query 150543 GTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGA-ACGCGATG 150599
| || || || |||||| | || | | ||| | ||||| | |||| | | | |
Sbjct 16175 GAGGAGAGTTTGAAGAAAGATTGAAAGCTGTTT--TGAAAGAAGTTGAAGATGCTCAAGG 16232
Query 150600 --ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGT 150646
| || ||||| ||||| ||||| || ||| || | |||||||||
Sbjct 16233 CAAAGTGATTCTCTTCATTGATGAGATTCATTTGGTTCTTGGTGCTGGT 16281
>seq248150
Length=2497
Score = 107 bits (118), Expect = 4e-18
Identities = 71/79 (90%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 324510 TATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTT 324569
|||||||||| ||||||||||||| |||||| |||||||||||| || ||||||||||||
Sbjct 197 TATATGGGGCCATAGCTCAGTTGGTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTT 256
Query 324570 CGAACCCGTTTAGCTCCAC 324588
||| |||||| |||||||
Sbjct 257 CGACTCCGTTTGGCTCCAC 275
>seq177818
Length=7968
Score = 102 bits (112), Expect = 2e-16
Identities = 281/417 (67%), Gaps = 18/417 (4%)
Strand=Plus/Plus
Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGT 150421
||||||||| | | ||| || || ||| ||||| ||| | || || ||||| |||||
Sbjct 4289 GATTCTTTCAAGAAGAACTAAGAACAATCCGGTGC-TTA-TCGGAGAGCCAGGAGTTGGG 4346
Query 150422 AAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCT 150481
||||| | ||||| || ||||| ||| | || | || || ||||||||| | |
Sbjct 4347 AAAACTGCTGTTGTTGAAGGTTTAGCTCAAAGGATTGTGAAAGGAGATGTTCCAAACAGT 4406
Query 150482 ATGAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTA 150540
| | ||||| || ||| |||||||| | |||||||| || |||||| |||| ||
Sbjct 4407 CTTACTGATGT-GAGATTGATTTCTTTGGACATGGGTGCTTTAGTTGCTGGGGCTAAATA 4465
Query 150541 TCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTAC--AAGAACTAAAAGAACGCGAT 150598
| || || || |||||| | | || ||| || | ||||| | ||||| ||
Sbjct 4466 CAGAGGAGAGTTTGAAGAAAGATT-GA-AATCTGTTTTGAAAGAAGTTGAAGAAGCTGAA 4523
Query 150599 G---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGC 150655
| | || ||||| ||||| ||||| || ||| || | ||||||||| ||||
Sbjct 4524 GGGAAAGTGATTCTCTTCATTGATGAGATTCATTTGGTTCTTGGTGCTGGTAAAACTGAA 4583
Query 150656 GGCGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG 150714
|| || ||||| ||| ||| |||| || ||| || || | ||| | ||||
Sbjct 4584 GGG---TCGATGGATGC-AGCGAATCTGTTCAAGCCTATGTTAGCTAGAGGTCAGCTTCG 4639
Query 150715 TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771
||| ||||| ||||| || || ||| | ||| || |||| |||||||||||
Sbjct 4640 ATGCATTGGTGCTACAACACTTGAAGAGTATAGGAAATACGTTGAGAAAGATGCAGC 4696
>seq244327
Length=1302
Score = 96.9 bits (106), Expect = 8e-15
Identities = 397/612 (65%), Gaps = 13/612 (2%)
Strand=Plus/Minus
Query 227028 TTTCTTCTGGACACCTGATGAGGTAGATTTATCTAAAGACCGAATAGATTTTAAATCACT 227087
||| || |||| |||||| || ||||| | ||| ||| ||||||||||| || | |
Sbjct 1088 TTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAA-AATT 1030
Query 227088 TACC-GATCACGAGAAGCACATATTTACTTCCAATCTAAAACGGCAAATTTTATTAGATT 227146
|||| || || || || || || ||| | ||| ||||| |||| |||||||| |
Sbjct 1029 TACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACT 970
Query 227147 CTGTTCAAGGTAGGGGTCCAAATTTAGTACTGTTGCCATATGCATCATTACCAGAACTTG 227206
|| ||||||| || |||| || | | | | ||| | || | || ||| | |
Sbjct 969 CTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAG 910
Query 227207 AAAATTTTATTGAAACATGGTCATTTTTTGAAGGTTCTATACATAGTAAATCATATACAC 227266
||| | |||||||||||||| |||| ||| |||| || || ||||| |
Sbjct 909 AAACCTGGATTGAAACATGGTCTTTTTCGGAA---ACTATTCACTCACGTTCTTATACTC 853
Query 227267 ATATTATTCGAAATATATATCCAAAC-CCAAGTGAAGTTTTTGATACTATGTTGGATATT 227325
|||||||| ||||||| | | | | ||| | | | |||||| ||| | | |
Sbjct 852 ATATTATTAGAAATAT-TGTTAATTCTCCATCTTTAATATTTGATGATATTATTTCCAAT 794
Query 227326 CCAGAAATTACATCAT-GTGCAACTGATATTTCAAAATATTATGATGATTTAGATAACTA 227384
| | |||| | || | || | |||||| | ||| ||||| || ||| |||| |
Sbjct 793 AAACATATTA-ACGATCGAGCTAAAAATATTTGCATATACTATGACGAATTA-ATAAAAA 736
Query 227385 -TGGAACTTATTATAAGTTATTGGGTGAAGGCACTCACACCGTTAATGGTGAAAAAATTG 227443
| | ||||| | ||||| |||||||| | || || || || |||| |||
Sbjct 735 TTACTAGTTATTGGCATTTATTCGGTGAAGGTATACATTTGGTAAAAGGAAAAAATATTA 676
Query 227444 TTGTTGATATGTATGAGCTAAAGAAAAAACTATGGCTATGTATTAACAGTATTAATATTC 227503
|| | | | ||| || |||||| ||| ||||| | | ||| ||||| |
Sbjct 675 ACATTACTTTAAGTTTGCTTAAAAAAAAATTATACCTATGCTTAATAAGTGTTAATGTAT 616
Query 227504 TAGAAGGTATTCGTTTTTATGTTTCATTTGCGTGTTCCTGGGCATACGCCGAGA-ACAAT 227562
|||||| ||| | ||||||||| ||||| ||||| | || | || || | | |||
Sbjct 615 TAGAAGCAATTAGATTTTATGTTAGTTTTGCATGTTCATTCGCTTTTGCAGAAAGAGAAT 556
Query 227563 CAACTTGAGGGGAATGCTAAAATAATTAGATTGATTTGTAGGGATGAGAATTTGCATTTA 227622
|| | || || ||||| ||||| || ||||| || || ||||| |||||| |
Sbjct 555 TAA-TGGAAGGTAATGCAAAAATTATAAGATTAATAGCAAGAGATGAAGCATTGCATCTT 497
Query 227623 GCAGCAACTCAA 227634
||| ||| |||
Sbjct 496 ACAGGAACACAA 485
>seq158858
Length=235449
Score = 93.3 bits (102), Expect = 1e-13
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 284183 TATGGGGATGTGGTGAAATTGGCAGACACGCCAGATTTAGGTTCTGGTTCTTCGGAGTGC 284242
|||| ||| |||||| ||||||||||||||| ||| ||||| ||| || |||||| |||
Sbjct 161260 TATGCGGACGTGGTGGAATTGGCAGACACGCTAGACTTAGGATCTAGTGCTTCGGCGTGA 161319
Query 284243 GAGTTCGAGTCTCGCCATCCCCACCATATTTGGAGTCTTAC 284283
||||||||||||| || ||| | | || ||||| ||||
Sbjct 161320 GAGTTCGAGTCTCTCCGTCCGTATCTAATGTGGAGGGTTAC 161360
>seq56932
Length=160465
Score = 87.8 bits (96), Expect = 4e-12
Identities = 77/95 (81%), Gaps = 2/95 (2%)
Strand=Plus/Minus
Query 284184 ATGGGGATGTGGTGAAATTGGCAGACACGCCAGATTTAGGTTCTGGTTCTTC--GGAGTG 284241
|||||| ||||| | |||||| |||| | ||||||||||||||||| | | || |||
Sbjct 24206 ATGGGGCTGTGGCGGAATTGGTAGACGCACCAGATTTAGGTTCTGGCGCCGCAAGGTGTG 24147
Query 284242 CGAGTTCGAGTCTCGCCATCCCCACCATATTTGGA 284276
||||||||||||| ||| ||||||||| || |||
Sbjct 24146 AGAGTTCGAGTCTCTCCAGCCCCACCATTTTCGGA 24112
>seq26767
Length=1149
Score = 84.2 bits (92), Expect = 5e-11
Identities = 264/404 (65%), Gaps = 4/404 (1%)
Strand=Plus/Minus
Query 224383 CCAACTCCAATTATGGCTGGACTACGTACTAACACTCGCCAATTTAGTTCTTGCGTAGTT 224442
|| || ||||||||| ||||| | | ||| ||||| |||||||| || || || |
Sbjct 440 CCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTA 381
Query 224443 AT-GAACGTTGGTGATAGTCTAGACAGCATTAGTGCTGGTAACAGTGCTATAATGCAGTA 224501
|| ||| || | ||||| |||||| |||| ||| || ||| |||| | | ||
Sbjct 380 ATTGAATGT-GATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATA 322
Query 224502 TATTTCTAAGAAAGCCGGTTTGGGAGTCAACTATGGTCGTGTCCGTGCAGTTGGTTCAGA 224561
| ||||| | ||| || | || | || ||| | |||||||| |||
Sbjct 321 TGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCC 262
Query 224562 AATTCGTGGTGGTGATGCTGTTCATACTGGATTGATTCCATTCCTACACGCAGTTGCTAA 224621
||| | ||| || || |||||||||| | ||||| || || | || || | ||
Sbjct 261 TATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTT-TATAAACATTTTCAAA 203
Query 224622 AA-CTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAACAGTCCACTTCC 224680
|||| ||||| ||||||||||| || || | ||||| || ||||| | | |
Sbjct 202 GTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATC 143
Query 224681 CATTGTGGCATTACGAGTTTGAAGATCTTGTAGTACTAAAGAATAACAAAGGTACAGAAG 224740
|| | ||||||| || ||||| | | |||| |||| ||||| | || | ||||
Sbjct 142 CAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAG 83
Query 224741 TATCTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAA 224784
| | | || ||||| | |||||| | ||||||||||||
Sbjct 82 AAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAA 39
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1143661212567544
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