Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq78640 127 4e-24 seq117240 100 5e-16 seq2866 87.8 3e-12 >seq78640 Length=167548 Score = 127 bits (140), Expect = 4e-24 Identities = 167/228 (73%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 168447 TTCTTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCG 168506 || |||||| | | ||| ||||| ||||| || ||||| || ||| ||||| |||| Sbjct 136714 TTTTTCGCCTCAGTACGTGACATCACGCGACCTGCGCCATGCGAGCAAGAGCAAAAGGAC 136655 Query 168507 TCAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATG 168566 || ||| || || ||||||||||| || || || || ||||| || || || ||||| Sbjct 136654 TCTTCGTTACCTTTACCGCGCACGATAAAGGATTTTGCACCCATTGACCCAGGGATGATA 136595 Query 168567 CCGAGTTCGTCCTTCTGCGCCGAC--ACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGC 168624 ||| |||| || | ||| || |||||||| || || || || || | ||||||| Sbjct 136594 CCGTATTCG-CCAAC-GCGAGCACGTACCGCGCCTTTACGTGTGACAAATACTTCCTCGC 136537 Query 168625 CGAAGTGGCGTTCCTTGTTGACGTAGTTGTGGTGACAGTTCACCGCTT 168672 || |||| ||| || | ||| ||||| || |||||||||||||||| Sbjct 136536 CGTAGTGCTCTTCTTTATCGACATAGTTATGATGACAGTTCACCGCTT 136489 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 169235 AGCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCAGCCGATGTCGACGCCGACCGCGTA 169294 ||| |||||||| || | || |||||||| ||||||||||| ||||| ||||| || Sbjct 135935 AGCGGTCAGCGTCGTTTGTACTGCCATCATACCGCAGCCGATATCGACACCGACAGCAGC 135876 Query 169295 CGGGATCACCGCATCCTTGGTCGGGATCACCGAACCAACGGCTGCGCCGTACCCGGCGTG 169354 ||||| | ||| || ||||| || | |||| ||| | | |||||| ||| | || Sbjct 135875 AGGGATAATCGCTTCTTTGGTTGGCAATACCGTACCGATAGTTGCGCCAATCCCAACATG 135816 Query 169355 GACGTCGGGCATCACCGCGA 169374 ||||| ||||| ||||||| Sbjct 135815 CACGTCAGGCATTACCGCGA 135796 >seq117240 Length=334284 Score = 100 bits (110), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 132955 AGTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGG 133014 || ||||||||||||||||||||| |||||||||| ||||||||||| ||||||| | Sbjct 165407 AGATTGATGCGGGGTGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTG 165466 Query 133015 GTTCAAATCCCTCCCCCGCATCCAC 133039 |||||||||| ||||||| |||| Sbjct 165467 GTTCAAATCCAGCCCCCGCTACCAC 165491 >seq2866 Length=853 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 77 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 18 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 17 CCTGCCCCCGCAACCA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 892774226705760