Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 614 6e-171
seq218717 127 2e-24
>seq28607
Length=83266
Score = 614 bits (680), Expect = 6e-171
Identities = 738/999 (74%), Gaps = 18/999 (2%)
Strand=Plus/Minus
Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561
||||||||| | ||| ||| ||||| | || | || ||||| ||||| ||||||
Sbjct 1499 TGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 1440
Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618
|||||| ||| | | ||| |||| | || || || ||||||||||| || |||
Sbjct 1439 ATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383
Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678
||||| ||||| |||||||| | ||||||||| | || || ||||| || || |||||
Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1323
Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738
|| || || ||||| | |||||| ||| ||||||||| | || || || || |||
Sbjct 1322 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1263
Query 162739 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTC 162798
|||||||| ||| | ||||||| ||| | || || || || |||| |||| | ||
Sbjct 1262 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1203
Query 162799 TTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTAC 162855
| ||||| | | || | ||| | | | |||||| ||||||||||| || |
Sbjct 1202 CTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1146
Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTC 162915
|| | ||||||||||||||||| ||||||||| || || || || | || |||
Sbjct 1145 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 1086
Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975
||||| |||||| |||| || | |||||||| ||| ||||| | |||||||| ||
Sbjct 1085 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1026
Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035
|| ||||||||||| |||| ||| | || ||||| || ||||||||||| || ||||||
Sbjct 1025 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 966
Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095
|| || || ||| | || || || ||||||||||| || || || ||||||||||||||
Sbjct 965 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 906
Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155
||||| | || |||||| | | ||||| ||||| || || | || || || |
Sbjct 905 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 846
Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215
||||| || ||||||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct 845 GGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 786
Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275
|| || ||||||||||| ||||| ||||||||| || ||||| | || |||||| |
Sbjct 785 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 726
Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335
|| || | || || || | || ||||| ||||| | ||| | || ||||| |||
Sbjct 725 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTC 666
Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATT 163392
||||| || |||||||| ||||||||||| || ||||| ||| || || |||
Sbjct 665 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTATT 609
Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452
||||||||| ||||| ||||| | || |||||||||||||||||||| || |||
Sbjct 608 AATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 549
Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491
||||||||||||||||| || ||||| ||||||| ||||
Sbjct 548 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
>seq218717
Length=448
Score = 127 bits (140), Expect = 2e-24
Identities = 156/212 (74%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 162833 GTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACT 162892
||||| ||||||||||| || | | ||||||||||||||||| ||||||||| |
Sbjct 219 GTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATATT 160
Query 162893 CTGCACCAGTAT-CTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951
| || || || | | || || | | ||| |||||| | ||||| | |||||||| |
Sbjct 159 CAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCAAGGAAGT 100
Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011
|| | | | | |||||||| || || ||| ||||||| |||| || | || |||||
Sbjct 99 TTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGTATTCCAG 40
Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCA 163043
|| ||||||||||| || |||||||| || ||
Sbjct 39 GCTGAGCACAACATTCTTATGCACCCATTTCA 8
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551237303188320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |