Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 538 4e-148
seq180749 145 9e-30
seq218717 114 1e-20
>seq28607
Length=83266
Score = 538 bits (596), Expect = 4e-148
Identities = 690/951 (73%), Gaps = 0/951 (0%)
Strand=Plus/Minus
Query 162934 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 162993
|| ||||| || || ||||||| || || | ||| | |||||| | ||| || ||
Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1401
Query 162994 GCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCA 163053
|| ||| | |||||||| || || || ||||| || || ||||| || || |||| ||
Sbjct 1400 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1341
Query 163054 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 163113
|| | || || ||||| || || || ||||| || |||| |||| || ||||||
Sbjct 1340 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1281
Query 163114 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 163173
| || || || || ||||||||||| ||||| ||||||| ||||| || ||||| |||
Sbjct 1280 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1221
Query 163174 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAA 163233
|||| |||| | || | ||||| | | || | | |||||||| |||||
Sbjct 1220 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1161
Query 163234 TGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCT 163293
||||||||| | || | |||||||| || ||||| ||| ||||| || || |||
Sbjct 1160 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1101
Query 163294 GTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 163353
|||||||| ||| | || || ||| || |||| || | |||||||| ||| |||||
Sbjct 1100 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 1041
Query 163354 GCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCAC 163413
| ||||| || || |||||||| || ||||||| ||| |||| ||||| || ||||||
Sbjct 1040 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 981
Query 163414 AACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTC 163473
||||| || |||||||| || || ||||| || || |||||||| ||||| || || ||
Sbjct 980 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 921
Query 163474 TTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACT 163533
|| || |||||||| | || || ||| | || | || || || |||| |
Sbjct 920 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 861
Query 163534 GAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCA 163593
|| || || | |||||||| || || ||||||||||| || |||||||| || ||
Sbjct 860 GAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCT 801
Query 163594 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGT 163653
|| ||||| || || || || ||||||||||||||||| |||||||| | |
Sbjct 800 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 741
Query 163654 CTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTA 163713
| || |||||| | || || ||||| || || || || ||||||||||| | || |
Sbjct 740 TTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATT 681
Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773
||||||||||| |||||||| || |||||||| |||||||| || | ||||| ||||
Sbjct 680 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA 621
Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTT 163833
|| ||||| | || |||||||| || | ||||||| ||| || ||||||||||||
Sbjct 620 GGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTT 561
Query 163834 ATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGAG 163884
|||||||| ||||| || ||||||||||| || || || ||||||| ||||
Sbjct 560 ATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
Score = 517 bits (572), Expect = 1e-141
Identities = 718/1006 (71%), Gaps = 0/1006 (0%)
Strand=Plus/Plus
Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678
||||||||| | | || ||||| |||||||| || |||||||| || | || ||
Sbjct 32416 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32475
Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738
|| ||| ||| | || | || |||||| | || || ||| | ||||| || |||
Sbjct 32476 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32535
Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798
|| || ||||| | ||| ||||||| | |||||| || ||| | || || || ||
Sbjct 32536 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 32595
Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858
||||| |||||| || | | | |||||| | | |||| ||||||||||| | ||
Sbjct 32596 TCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32655
Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918
|| |||| || ||||| ||| | || || || ||| ||| || |||||||||||
Sbjct 32656 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 32715
Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTATC 164978
|| ||||| |||| ||||| ||| | || || ||||| || || || | || |
Sbjct 32716 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTG 32775
Query 164979 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTT 165038
|| ||||| ||||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct 32776 CGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTA 32835
Query 165039 ATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATC 165098
|| || ||||||||||| || ||||||| || || || ||||| || || || ||
Sbjct 32836 ATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATA 32895
Query 165099 TTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATG 165158
||| ||||| | | || | ||||| || || || ||||| | ||||| || ||||||
Sbjct 32896 TTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 32955
Query 165159 ATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTT 165218
||||| || || ||| | |||| | || |||||| ||||||||||| | || ||
Sbjct 32956 ATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTA 33015
Query 165219 GAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACA 165278
|||||||| |||| || ||||| || |||||||| || || ||| | | ||
Sbjct 33016 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 33075
Query 165279 CAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGC 165338
|| | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| ||
Sbjct 33076 CAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGG 33135
Query 165339 ATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGT 165398
|||| ||||| || || || ||| | ||||| || ||||| ||||| || || | |||
Sbjct 33136 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGT 33195
Query 165399 CTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTC 165458
| |||| || |||| | | || || ||| | ||||| ||||| || || |||
Sbjct 33196 TTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTC 33255
Query 165459 GTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAAC 165518
|| ||||| ||| | ||||| |||||||| ||||||||||| ||||| || |||||
Sbjct 33256 GTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAAT 33315
Query 165519 ATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAAC 165578
|| || || || ||||| | ||||||||| |||| || ||||| || |||||||||
Sbjct 33316 ATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 33375
Query 165579 TTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624
|||| ||||| || || || | || | || ||||| |||||||
Sbjct 33376 CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33421
>seq180749
Length=15184
Score = 145 bits (160), Expect = 9e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080
||||| || || || || ||| | || ||||| || ||| | || ||||||||
Sbjct 10913 ACTCCCGATGGTGAGCTAGAGGTCGAATGCGAAGACGACGTTTACGTCCTCGACGCAGCT 10972
Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140
|||||||||||| | ||| | ||||||||| || ||||| | || || ||||||
Sbjct 10973 GAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGCTCTGGTTCATGTTCTAGCTGTGCA 11032
Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200
|||||| || |||||||||||||||||| ||| ||| ||||| || |||||||||
Sbjct 11033 GGTAAAGTTAAGTCTGGAACTGTTGATCAGTCTGACCAGAGTTTCCTCGATGATGATCAG 11092
Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248
||||| | |||||| || || || |||| || ||||| || ||||||
Sbjct 11093 ATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACCTCTGAT 11140
>seq218717
Length=448
Score = 114 bits (126), Expect = 1e-20
Identities = 160/222 (72%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 163219 TATATGGGACGTGAATGGGAACTT---TCATATCGCTTAGGTATGCGCCCCTGGATCTGT 163275
|||||| | ||||| ||||||||| | || || | |||||||| || ||||| |
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTC---TGGGTATGCGTCCTTGGATTGTT 170
Query 163276 GTAGCATACTCTGCACCTGTT-GCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGG 163334
|| ||||| || || |||||| ||||| || | || ||| || | ||||| | ||
Sbjct 169 GTTGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGG 110
Query 163335 TCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCT 163394
|||||| ||| | | | | ||||| || || |||||| | || ||||||| || |
Sbjct 109 TCAAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTAT 50
Query 163395 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCA 163436
||| ||||| || ||||||||||| || |||||||| || ||
Sbjct 49 TGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561328282812640
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