Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019448.1 Length=139806 Score E Sequences producing significant alignments: (Bits) Value seq158858 188 6e-43 seq111679 131 1e-25 >seq158858 Length=235449 Score = 188 bits (208), Expect = 6e-43 Identities = 422/625 (68%), Gaps = 14/625 (2%) Strand=Plus/Plus Query 134991 TTACTACAATGCAGATGTAGAAAAAGAAATGGTTGTTGCTTCCATCCCTGCTACTGAACA 135050 ||| |||||||| | | ||||| ||| | || | | || || || ||||||||||| Sbjct 214278 TTATTACAATGCGAACATTGAAAAGGAATTAGTAGGAACATCAATACCAGCTACTGAACA 214337 Query 135051 TTCGGTTATGTGTGCAAATGGTGATTACGAGACAATGGATGAATATGAAACATACAAACG 135110 ||| ||||||| ||||| ||| || | ||||||| |||| ||||| || Sbjct 214338 TTCAGTTATGTCAGCAAACACAGATGCAGATAGCCGTGATGAATTCGAAATGTACAAGCG 214397 Query 135111 TATGTTAACAGAAATTTATCCAACAGGAGTATTCTCTATTGTATCTGATACTTGGGACTT 135170 | | |||| || | ||||| | ||| | ||| | | || || || || | || || Sbjct 214398 TCTTATAACTGAGGTATATCCTAAAGGCTTCTTCAGTGTAGTTTCAGACACGTATGATTT 214457 Query 135171 TTGGG--GTAATATGACTAAAACTTTACCTAGG-TTAA-AAGATATTATTATGGAACGTG 135226 |||| ||| || || || ||| ||| | |||| ||| | || |||||||||| Sbjct 214458 CTGGGCAGTAGTAGGAGAAATTCTT--CCTCGTCTTAAGAAGGAA--ATCATGGAACGTG 214513 Query 135227 ACGGTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAGATTATTTGTGGTGACC 135286 | ||| | || || | ||||||||||||||||||||| ||| || |||| ||| Sbjct 214514 ATGGTCGTATGGTTATTCGTCCTGATAGTGGAGACCCTGTTCTTATTCTTACTGGTAACC 214573 Query 135287 CTGATGCAGATACTGAGTATGAACGTAAAGGTGCTGTAGAAGTACTTTGGGATACTTTTG 135346 | || ||| | || || |||||||||||| | || | | ||||||| |||| Sbjct 214574 CAGAAGCAAAAACAGAACTTGAACGTAAAGGACTAATTGAGGCTTTATGGGATATCTTTG 214633 Query 135347 GAGGTACTGAAACTGAAAAAGGATATAAAGTACTAGATGAACATGTAGGATTAATCTATG 135406 | || || ||||| || || |||||| || ||||| ||| | || |||||||| Sbjct 214634 GTGGAACAATTACTGAGAAGGGTTATAAACTATTAGATACTCATATTGGTGCAATCTATG 214693 Query 135407 GTGATTCTATTAACTATGAGCGTGCTCAGCAAATTTGTGAGGGATTAAAAGCAAAAGGTT 135466 |||| ||||||| ||||||||| | ||| |||| ||| ||| |||||| | Sbjct 214694 GTGACTCTATTACTCTTGAGCGTGCAAAAGCTATTGTTGAGAAGTTAGAAGAAAAAGGCT 214753 Query 135467 TTGCAAGTATTAACGTTGTATTAGGTGTAGGTAGTTTCTCTTATCAATTTAATACTCGTG 135526 |||| | |||||||| || || || || || ||| |||| | | ||||| | Sbjct 214754 TTGCTTCAACAAACGTTGTTTTCGGCGTGGGATCTTATACTTTCCAATATCAGACTCGCG 214813 Query 135527 ATACTCATGGGTTTGCAATCAAAGCAACATATGCTAAGATTAAAAATGAAGAGAAAC--T 135584 || ||| |||||||| || ||||| ||||||||| | ||||| ||| ||| | Sbjct 214814 ATTCTCTAGGGTTTGCTATGAAAGCTACATATGCT---GTAGTAAATGGAGAAGAACGTT 214870 Query 135585 TA-TCTATAAGAATCCTAAAACAGA 135608 || | | ||| |||| |||||||| Sbjct 214871 TATTGTTCAAGGATCCAAAAACAGA 214895 >seq111679 Length=1463 Score = 131 bits (144), Expect = 1e-25 Identities = 251/369 (68%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 21745 TTGTACAAAGTTTACTAAATCC---TCATTACTTGATAGTTGGTGTTCTACCTTATTATC 21801 ||||||||| | |||||| || |||| ||| |||| | |||| | | ||| Sbjct 1089 TTGTACAAACTCTACTAATTCTGTATCATCACTA---AGTTTTTTCTCTAGTTCTTCATC 1145 Query 21802 ATAATCAAATTCAACTTGAGCAAAACGGTCTAATGTAGCTCCATCCAGTTGCTGTCTTCC 21861 ||| | ||| || | | |||| | ||| |||||||| |||| ||| || | ||| Sbjct 1146 ATAGTTAAAGTCTAAAAGTACAAACCTGTCCAATGTAGCAGCATCTAGTATATGACGTCC 1205 Query 21862 CACATAAATATGGTCTGCTCCAGTTCCCATAGTATTACCTGCTGATACTACTCTAAAGTC 21921 ||| ||||| ||||| | || | |||||| | || | ||||| |||| || Sbjct 1206 TGTATACTGCTGGTCAGCTCCCCTACCTGTTGTATTAGCAGCAGCCACTACAGTAAAATC 1265 Query 21922 TTCATGTGCTGTCACACGACCAATAGGGAAGTCAAAGTATTTATTTGCAATAGCTGAGTT 21981 ||||||| | |||| |||| || | |||||| ||| ||||| || | || Sbjct 1266 AGGATGTGCTTGAGCTTTACCATTAGGAAAATTAAAGTACCGATTAGCAATTGCAGCATT 1325 Query 21982 AAGAATTAATAATACTTCAGGGATAGATGCATCCATCTCATCTAGGAAGAATAATCCTCC 22041 || || | ||| | || || | || |||||||| ||||||| ||| |||| || || Sbjct 1326 CAGTATAACTAAAGCCTCTGGTACCGAAGCATCCATTTCATCTAAGAAAAATATACCCCC 1385 Query 22042 ATTTGTAAATGCTTTATAAAACTGAGTTTCATGAAACTTACCATTTGCATCAATAAATCC 22101 || ||||| |||| ||||||||||| || ||| | ||||| || ||||||||||| Sbjct 1386 CTTAGTAAAAGCTTGGTAAAACTGAGTCTCCTGATATGTACCAGAAGCGTCAATAAATCC 1445 Query 22102 TGTTAATTT 22110 |||||||| Sbjct 1446 AGTTAATTT 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757224454080