Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019448.1
Length=139806
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 188 6e-43
seq111679 131 1e-25
>seq158858
Length=235449
Score = 188 bits (208), Expect = 6e-43
Identities = 422/625 (68%), Gaps = 14/625 (2%)
Strand=Plus/Plus
Query 134991 TTACTACAATGCAGATGTAGAAAAAGAAATGGTTGTTGCTTCCATCCCTGCTACTGAACA 135050
||| |||||||| | | ||||| ||| | || | | || || || |||||||||||
Sbjct 214278 TTATTACAATGCGAACATTGAAAAGGAATTAGTAGGAACATCAATACCAGCTACTGAACA 214337
Query 135051 TTCGGTTATGTGTGCAAATGGTGATTACGAGACAATGGATGAATATGAAACATACAAACG 135110
||| ||||||| ||||| ||| || | ||||||| |||| ||||| ||
Sbjct 214338 TTCAGTTATGTCAGCAAACACAGATGCAGATAGCCGTGATGAATTCGAAATGTACAAGCG 214397
Query 135111 TATGTTAACAGAAATTTATCCAACAGGAGTATTCTCTATTGTATCTGATACTTGGGACTT 135170
| | |||| || | ||||| | ||| | ||| | | || || || || | || ||
Sbjct 214398 TCTTATAACTGAGGTATATCCTAAAGGCTTCTTCAGTGTAGTTTCAGACACGTATGATTT 214457
Query 135171 TTGGG--GTAATATGACTAAAACTTTACCTAGG-TTAA-AAGATATTATTATGGAACGTG 135226
|||| ||| || || || ||| ||| | |||| ||| | || ||||||||||
Sbjct 214458 CTGGGCAGTAGTAGGAGAAATTCTT--CCTCGTCTTAAGAAGGAA--ATCATGGAACGTG 214513
Query 135227 ACGGTAAAGTAGTAATCAGACCTGATAGTGGAGACCCTGTTAAGATTATTTGTGGTGACC 135286
| ||| | || || | ||||||||||||||||||||| ||| || |||| |||
Sbjct 214514 ATGGTCGTATGGTTATTCGTCCTGATAGTGGAGACCCTGTTCTTATTCTTACTGGTAACC 214573
Query 135287 CTGATGCAGATACTGAGTATGAACGTAAAGGTGCTGTAGAAGTACTTTGGGATACTTTTG 135346
| || ||| | || || |||||||||||| | || | | ||||||| ||||
Sbjct 214574 CAGAAGCAAAAACAGAACTTGAACGTAAAGGACTAATTGAGGCTTTATGGGATATCTTTG 214633
Query 135347 GAGGTACTGAAACTGAAAAAGGATATAAAGTACTAGATGAACATGTAGGATTAATCTATG 135406
| || || ||||| || || |||||| || ||||| ||| | || ||||||||
Sbjct 214634 GTGGAACAATTACTGAGAAGGGTTATAAACTATTAGATACTCATATTGGTGCAATCTATG 214693
Query 135407 GTGATTCTATTAACTATGAGCGTGCTCAGCAAATTTGTGAGGGATTAAAAGCAAAAGGTT 135466
|||| ||||||| ||||||||| | ||| |||| ||| ||| |||||| |
Sbjct 214694 GTGACTCTATTACTCTTGAGCGTGCAAAAGCTATTGTTGAGAAGTTAGAAGAAAAAGGCT 214753
Query 135467 TTGCAAGTATTAACGTTGTATTAGGTGTAGGTAGTTTCTCTTATCAATTTAATACTCGTG 135526
|||| | |||||||| || || || || || ||| |||| | | ||||| |
Sbjct 214754 TTGCTTCAACAAACGTTGTTTTCGGCGTGGGATCTTATACTTTCCAATATCAGACTCGCG 214813
Query 135527 ATACTCATGGGTTTGCAATCAAAGCAACATATGCTAAGATTAAAAATGAAGAGAAAC--T 135584
|| ||| |||||||| || ||||| ||||||||| | ||||| ||| ||| |
Sbjct 214814 ATTCTCTAGGGTTTGCTATGAAAGCTACATATGCT---GTAGTAAATGGAGAAGAACGTT 214870
Query 135585 TA-TCTATAAGAATCCTAAAACAGA 135608
|| | | ||| |||| ||||||||
Sbjct 214871 TATTGTTCAAGGATCCAAAAACAGA 214895
>seq111679
Length=1463
Score = 131 bits (144), Expect = 1e-25
Identities = 251/369 (68%), Gaps = 6/369 (2%)
Strand=Plus/Plus
Query 21745 TTGTACAAAGTTTACTAAATCC---TCATTACTTGATAGTTGGTGTTCTACCTTATTATC 21801
||||||||| | |||||| || |||| ||| |||| | |||| | | |||
Sbjct 1089 TTGTACAAACTCTACTAATTCTGTATCATCACTA---AGTTTTTTCTCTAGTTCTTCATC 1145
Query 21802 ATAATCAAATTCAACTTGAGCAAAACGGTCTAATGTAGCTCCATCCAGTTGCTGTCTTCC 21861
||| | ||| || | | |||| | ||| |||||||| |||| ||| || | |||
Sbjct 1146 ATAGTTAAAGTCTAAAAGTACAAACCTGTCCAATGTAGCAGCATCTAGTATATGACGTCC 1205
Query 21862 CACATAAATATGGTCTGCTCCAGTTCCCATAGTATTACCTGCTGATACTACTCTAAAGTC 21921
||| ||||| ||||| | || | |||||| | || | ||||| |||| ||
Sbjct 1206 TGTATACTGCTGGTCAGCTCCCCTACCTGTTGTATTAGCAGCAGCCACTACAGTAAAATC 1265
Query 21922 TTCATGTGCTGTCACACGACCAATAGGGAAGTCAAAGTATTTATTTGCAATAGCTGAGTT 21981
||||||| | |||| |||| || | |||||| ||| ||||| || | ||
Sbjct 1266 AGGATGTGCTTGAGCTTTACCATTAGGAAAATTAAAGTACCGATTAGCAATTGCAGCATT 1325
Query 21982 AAGAATTAATAATACTTCAGGGATAGATGCATCCATCTCATCTAGGAAGAATAATCCTCC 22041
|| || | ||| | || || | || |||||||| ||||||| ||| |||| || ||
Sbjct 1326 CAGTATAACTAAAGCCTCTGGTACCGAAGCATCCATTTCATCTAAGAAAAATATACCCCC 1385
Query 22042 ATTTGTAAATGCTTTATAAAACTGAGTTTCATGAAACTTACCATTTGCATCAATAAATCC 22101
|| ||||| |||| ||||||||||| || ||| | ||||| || |||||||||||
Sbjct 1386 CTTAGTAAAAGCTTGGTAAAACTGAGTCTCCTGATATGTACCAGAAGCGTCAATAAATCC 1445
Query 22102 TGTTAATTT 22110
||||||||
Sbjct 1446 AGTTAATTT 1454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445757224454080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |