Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019489.1
Length=41726
Score E
Sequences producing significant alignments: (Bits) Value
seq220129 459 7e-125
seq185512 450 4e-122
seq114485 331 2e-86
seq25145 158 3e-34
seq219614 150 5e-32
seq57530 127 5e-25
seq244515 111 4e-20
>seq220129
Length=9922
Score = 459 bits (508), Expect = 7e-125
Identities = 304/337 (90%), Gaps = 0/337 (0%)
Strand=Plus/Plus
Query 24192 ATGTTAGTGCCAATAAATTAACAGCTGGCACGATTGACTTTAATACAATTACTGGTAAAA 24251
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 488 ATGTTAGTGCCAATAAATTAACAGCTGGCACGATTGACTTTAATACAATTACCGGTAAAA 547
Query 24252 ATATCAACGCATCAAACATCACAACAGGAACACTCAGCACTGACCGGTTAAATGTCGACA 24311
||||||||||||||||||||||||| |||| || | |||||||||||||||||| |||
Sbjct 548 ATATCAACGCATCAAACATCACAACGGGAAAGCTAAACACTGACCGGTTAAATGTTAACA 607
Query 24312 AACTATCAGCTTTAAGTGCCAATTTAGGTGATGTTACAACCGGCTCACTCAAAGGTGTCG 24371
| ||||||||| |||||| | ||||||||||| |||||||||||||||| |||||||||
Sbjct 608 AGCTATCAGCTGTAAGTGGCGATTTAGGTGATATTACAACCGGCTCACTTAAAGGTGTCA 667
Query 24372 ACATTGTGGCTAACACGTTTAGCACGCCTAATGGCTCATTTACAACCGATGCAAACGGTA 24431
||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 668 ACATTATTGCTAAAACGTTTAGCACGCCTAATGGCTCATTTACAACCGATGAAAACGGTA 727
Query 24432 ATGTGGTGGCTAGCAATTTAACAATTAGAGGTGTTACTAACCTAGTTTATAATGCTGCAT 24491
|||||| |||||||| ||||||||||||||| ||||||| |||| ||||| || ||||
Sbjct 728 GTGTGGTTGCTAGCAAGTTAACAATTAGAGGTATTACTAATTTAGTCTATAACGCAGCAT 787
Query 24492 TATTAGGTGGTAGTGGCTCCAGCATTCCGGGATGGGG 24528
|||||||||||| |||||| ||||||||||||||
Sbjct 788 TATTAGGTGGTAATGGCTCATCTATTCCGGGATGGGG 824
Score = 343 bits (380), Expect = 4e-90
Identities = 403/548 (74%), Gaps = 30/548 (5%)
Strand=Plus/Plus
Query 25726 GGACGTTAAAAAGGCTGACACAGCTTATTGGGCGCAGCTAGTTAACTCAATTGATTTAGC 25785
||| |||||||| ||||| || | |||||| | ||| | ||||| ||||| || ||||
Sbjct 2001 GGATGTTAAAAAAGCTGATACTTCCTATTGGTCACAGTTGGTTAATTCAATCGACCTAGC 2060
Query 25786 CACTTATCAGTACAAAACAGACGATAATACCAGTCATTTGCGGCTGTCTAGCATTGTTGA 25845
|| || ||||| ||| || |||||||| || | | | || || | ||||||||
Sbjct 2061 AACGTACCAGTATAAAGATGATGATAATACTAGCAACCTTAGACTATCGGGGATTGTTGA 2120
Query 25846 CGACGTTAATGTAACAAAACAGTGGCAATTGCCAGACGTATTTATTAGTCGTGATGAAAA 25905
|| |||||| || || ||||||||| |||| ||| | ||| || |||||| || |
Sbjct 2121 TGATGTTAATACAAATAAGCAGTGGCAACTGCCGGACATCTTTGTTTCTCGTGACGAGGA 2180
Query 25906 CGGCAAGCTAAGTGGGGTGGATGATAGTGTGCTTTTAAATGCCACCCTAGCCACGGTACA 25965
|| || ||| || | || ||| || ||| |||||||| |||| || ||||
Sbjct 2181 TGGGAAACTAGCCGGAATTGAAAATACCGTACTTCAAAATGCCATGTTAGCAACTATACA 2240
Query 25966 GGAACAACAGAAGCAAATTGACCAACTAAACGGTCACAACATGGAATTGGAAGCTAGACT 26025
||||||||| ||| ||||||||||| ||||||| || ||| |||
Sbjct 2241 GGAACAACAAAAGGAAATTGACCAATTAAACGGGCATTT------ATTAGAA-------- 2286
Query 26026 AAACAAATTGGAGGCCAAATTAAATGGATAGCATTTTGATTACAAATTACAAACCAGATT 26085
|||||||| |||||||||||||| |||||| || ||||| || |||||||| |
Sbjct 2287 -------TTGGAGGCAAAATTAAATGGATAACATTTTAATCACAAACTATAAACCAGACT 2339
Query 26086 ACACGAACAACATTATGACCATTAGCGTTCAGATTAACACGCTGGGTATCAGTTCACAGG 26145
| ||||||||||||||||| ||||| ||||||||||||| || | |||||||||||||
Sbjct 2340 ATACGAACAACATTATGACTATTAGTATTCAGATTAACACACTAGCAATCAGTTCACAGG 2399
Query 26146 TCAGTATTACCATGGATGAATTTAACACTGCCATTGCTGGAGGTGCTGGTGGCATTGATA 26205
|||| ||||||||||| || ||||| ||||| |||| || |||||| ||||||
Sbjct 2400 TCAGCATTACCATGGACGATTTTAATACTGCTATTG-TG--------GGTGGCGTTGATA 2450
Query 26206 GCGTTAAGTTAAAAGTATTAAATACTCTGATTGATAGCCTGACTGCTTTAAAGCCAGTTA 26265
|||||| | ||||| || || || |||||||| || ||||| ||||||||||||||||
Sbjct 2451 ATGTTAAGCTGAAAGTGTTGAACACACTGATTGACAGTCTGACCGCTTTAAAGCCAGTTA 2510
Query 26266 CCACGACT 26273
|| ||||
Sbjct 2511 CCCTGACT 2518
Score = 138 bits (152), Expect = 3e-28
Identities = 142/189 (75%), Gaps = 15/189 (8%)
Strand=Plus/Plus
Query 24911 TTTAGTTCACCTATGCTAACCCAAACTGCTCAAGCTACTGGTTACCAGCCAGATACAGGT 24970
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1213 TTTAGCTCACCTATGCTAACTCAAACTGCTCAAGCTACTGGTTACCAGCCAGACACAGGC 1272
Query 24971 AATGTTGTTAGCGCTGGCGAAATAGATGGCTCAGTTATCAATGGTTCAACCATTAATGGG 25030
|||||| ||| ||||| ||| || |||||| | | ||| ||||
Sbjct 1273 AATGTTATTAATGCTGGAGAA---------------ATTAATGGTACCATTATTCATGGT 1317
Query 25031 ACAACGTTCCATGGTGGCGACAGTATTAGTGATTCTAATAATACGAGTAATTTTTATCCA 25090
|||| ||| ||||||| |||| ||||| |||| ||||| || ||||| |||||||
Sbjct 1318 TCAACATTCTATGGTGGTGACATTATTAACAATTCCAATAACACCGCTAATTATTATCCA 1377
Query 25091 TTCACCATT 25099
| || |||
Sbjct 1378 ATGACTATT 1386
>seq185512
Length=7282
Score = 450 bits (498), Expect = 4e-122
Identities = 374/456 (82%), Gaps = 6/456 (1%)
Strand=Plus/Minus
Query 23366 GATTTAAATGACCCCAATTTAATGAGTGTCATTGAAAAGCAGACCCAAGCAGC---ACAA 23422
||||||||| | || || |||||||||||||||||||||||||| ||| | |||
Sbjct 821 GATTTAAATAATCCAAACTTAATGAGTGTCATTGAAAAGCAGAC---AGCGGTCAAACAG 765
Query 23423 TATGCCGGATTAACAAGTCAGTATAATGTGATTCTAGCCCGTGCTAAAGATGCCAGTATC 23482
|||||||||||||| || ||||| || |||||| |||||||||||||||||| |||||||
Sbjct 764 TATGCCGGATTAACCAGCCAGTACAACGTGATTTTAGCCCGTGCTAAAGATGACAGTATC 705
Query 23483 AGTACGACCGCTTTAACCACAGCCTATACTAACCTGAACACCTTTATGACGGCCATCTTA 23542
||||| || | ||||||||| ||||||||||||||| ||| |||||| ||| || | ||
Sbjct 704 AGTACAACTGATTTAACCACGGCCTATACTAACCTGGACAACTTTATAACGCCCCTACTA 645
Query 23543 ACGGATACCACTAAGGCCAGTGATGTCAATCGGAACACTTATAAGAGCCTCACAGACGCT 23602
| ||||| |||||||| ||| | | | ||| |||||||||| || |||||| |||||
Sbjct 644 AAAGATACTACTAAGGCTAGTAAAATTGACCGGTACACTTATAATAGTCTCACATACGCT 585
Query 23603 TACAATATGGCTCTAAGCAATGTACAGACCGCCTTAAAGGACGCCTATAACACTGACATT 23662
||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| || |||
Sbjct 584 TACAATACGGCTCTAAGTAATGTACAGGCCGCCTTAAAGGACGCCTATAACACAGATATT 525
Query 23663 GATAACATGCAGTCTAGTGTTGCAGTGGCTAGTCAATCTGCTTCTAGTGCTGCTATAGTC 23722
||||||| | ||||||||||||| ||||||||| | ||||||||||| |||||||||
Sbjct 524 AGTAACATGTATACTAGTGTTGCAGTAGCTAGTCAAGCCGCTTCTAGTGCCGCTATAGTC 465
Query 23723 GCTTCACAGGCAACGGTAACTGGCAATAGTGCTAGTCAGGTTGCATCACAAGCCGTTGTG 23782
|||||||||||| | |||||| ||| ||||||||| | ||| ||| ||| | |
Sbjct 464 GCTTCACAGGCAGCTACAACTGGGGATAATGCTAGTCATGCTGCGGAACAGGCCCGTATA 405
Query 23783 GTAGCCAGTCAAGCTCAAAGTGCTGGTAACAATGCA 23818
| ||| || |||||||||| ||||||| | || |||
Sbjct 404 GCAGCTAGCCAAGCTCAAATTGCTGGTGATAACGCA 369
>seq114485
Length=730
Score = 331 bits (366), Expect = 2e-86
Identities = 509/722 (70%), Gaps = 7/722 (1%)
Strand=Plus/Plus
Query 6287 GCTATATTTGATGAAATTGGTGAAGT--AAAGACACGGCAAAAGATTTCCAAGATTGTAT 6344
||||| ||||||||||| || ||||| |||| | || | ||||| || || || |||
Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCG--ATAAGATATCAAAAATCATAT 60
Query 6345 CAGGCCAAGTTAAAGTGCGTAATAAGCAGTTCATTCAAATATCAACAGCGTATCCTGATC 6404
| || ||||| ||||| || ||| || |||| || || ||||| ||||| | |
Sbjct 61 CCGGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAAC 120
Query 6405 CAACCGTGCCATTCCACGATGATGAGCGTATGATTCAGCAAGCCATGGAACAAGATTATT 6464
| || || ||||| || || || |||||||||||||||||||| ||||||||
Sbjct 121 CGGGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTACA 180
Query 6465 TGCGCGATGCTGATACATATTTGGGACTTATTTGGTCGCAGGATAATCTGGACGAAACTT 6524
||| || |||||||| || || |||||||||||| |||| || | ||| | || || |
Sbjct 181 AGCGAGACGCTGATACGTACTTAGGACTTATTTGGGCGCAAGACAGTCTTAATGAGACGT 240
Query 6525 ATAAGCCTGATATGTGGGTTAAAAGTAATCCCTTGCTAGATTTACCGAGCCAACGAGAAG 6584
||||| || | |||||||| |||||||| | | || || || ||| ||||||
Sbjct 241 TCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAAGAGAAG 300
Query 6585 TGTTGCTGAACGGCTTGACAGATAAGCGCGATTCTGACGCTTTGTCGGGTACACTCAACG 6644
|||| || | |||||| || ||||| ||| |||| | || | | |
Sbjct 301 TGTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATTGGAG 360
Query 6645 ATTTCCAAAATAAGAACCTTAACTTGTGGCTAGAACAATCGGTCGACAGCTTCTTAAAAC 6704
| || ||||| |||||||| || ||||||| || |||| || || | ||| ||||
Sbjct 361 ACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAGATAGTTACTTGAAAC 420
Query 6705 TGCCTGACGTTGAAAAAGCCATCGTGCCATCATTTAGTTTTGACGATCGGCAAGTTTATA 6764
| | ||| |||| || || | || ||| | |||| | ||| | |||||||
Sbjct 421 TAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTCGTGATGTTTATA 480
Query 6765 TTGGTTTTGACTACTCAATGTTTAGTGATAACACGGCGCTAGCGTTTGTATTCCCTTATC 6824
| ||||||||||| || ||||| || |||||||| ||||| || ||||| || || |||
Sbjct 481 TCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTTTCCATATG 540
Query 6825 GCGATAATAATGACAAACCACGATGGTTTATTTATCAGCATAGCTTTATTCCCTGGCAGA 6884
|||| ||| |||| || |||| ||| ||| ||| |||||||| ||||| |
Sbjct 541 AAGATAGCGATGGGAAAC-AC--TGGTACATTGCTCAACATTCGTTTATTCCTTGGCAAA 597
Query 6885 AAGCTGGTTCGATTGAAGCTAAAGAAAAACAAGACGGTATTAATTATCGGGACTTAGCTA 6944
||||||| || |||||||| || ||||| |||||||| ||| || || || | || |
Sbjct 598 AAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCGAGAGCTGGCAA 657
Query 6945 AAAAGGGATTTTGTACAATTAGTAGCCATCCGCAAGGACTGATTAATGACGAGCAGGTTT 7004
|| | || ||||| ||||| | ||||||||||||||| | || ||||| || ||||| |
Sbjct 658 AAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAATGATGATCAGGTGT 717
Query 7005 AT 7006
||
Sbjct 718 AT 719
>seq25145
Length=439
Score = 158 bits (174), Expect = 3e-34
Identities = 218/305 (71%), Gaps = 0/305 (0%)
Strand=Plus/Plus
Query 18332 AATGGTTTTGGTGCTACCGCTAGCCAAGTATCTGCTTGGATGCGTGTTATTGCACGTGAA 18391
|||||||||| ||| |||| |||||| |||| |||||||| ||||| ||||||
Sbjct 2 AATGGTTTTGATGCCTCCGCATACCAAGTTGCTGCATGGATGCGAGTTATCCAGCGTGAA 61
Query 18392 TCAAATGGTAATCCAAGAGCTATTAACTTGTGGGATTCTAACGCTAAAAAGGGTATTCCA 18451
|| ||||||||||| || || ||||||||||||||| ||||||||| || || ||
Sbjct 62 TCCAATGGTAATCCTAGGGCAATTAACTTGTGGGATAGCAACGCTAAAGCCGGCATACCT 121
Query 18452 TCAATGGGCTTAGTTCAAACTATTCGGCCAACATTTGAAGCATATAAATTTTCAGGACAT 18511
|||||||| | || ||||||||| ||||||| || | || | ||| ||| | || ||
Sbjct 122 TCAATGGGGCTTGTACAAACTATTGGGCCAACGTTCAATGCGTTTAAGTTTCCCGGCCAC 181
Query 18512 GGTCAGATTTATAATGGGTATGATGACTTATTAGCTGGGATTAACTATATGAAACATATA 18571
| ||||||| || ||||| || | | || || ||| |||| ||||| ||
Sbjct 182 AACGATGTTTATAACGGCTATGACGATCTGCTTGCCGGTATTCACTACATGAAGGCCATC 241
Query 18572 TATGGTAAAGGCGACAGTGCATTCGCTAGGGTAAGCGGCCCTGAAGGATATGCAAATGGT 18631
|| || || ||| || ||| | || || ||||||||||| || || ||||||
Sbjct 242 TACGGCTCTGGAAGTTCTGCCTTTGCTCGTGTCAGTGGCCCTGAAGGGTACGCCAATGGT 301
Query 18632 GGTTT 18636
|| ||
Sbjct 302 GGCTT 306
>seq219614
Length=1033
Score = 150 bits (166), Expect = 5e-32
Identities = 192/263 (73%), Gaps = 1/263 (0%)
Strand=Plus/Minus
Query 5823 TTAAA-TTCGCTTCCATATGTCCTAACGTTGATACTGGTGAACCAACTAAACTAATGCCA 5881
||||| ||||| | || || || | || ||||| || || || || || || |||||
Sbjct 475 TTAAACTTCGCCGCTATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCT 416
Query 5882 TGGCAAAAATTCATTATGGCTATGCTGATTGGTTGGCGTAATGATGACGGTGGTAAACGT 5941
||||| || || || || || || || ||||||||| | ||||||||||||||
Sbjct 415 TGGCAGGCTTTTATATTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGG 356
Query 5942 TTTTCACGGGCTATTGTTTCCGTTGCGCGTGGCCAAGGTAAAACTTATCTTATGGCGATT 6001
||| || || |||||| ||||| ||||| ||||| || || || | ||| | ||
Sbjct 355 TTTAGTCGTGCAATTGTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATC 296
Query 6002 ATCACTGCTTATAGCTATTTAATTGAATCGTTGGGACTGTCTAACCAAGATTACTTAGTA 6061
|| | ||| |||||| |||||||| ||||| ||||||||||||||| |||||||
Sbjct 295 ATTGCGTGTTACTCATATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATTTCTTAGTA 236
Query 6062 TCTTCTATTAATTACAAACAAAC 6084
| || ||||||||||| |||||
Sbjct 235 GCATCGATTAATTACAAGCAAAC 213
>seq57530
Length=397
Score = 127 bits (140), Expect = 5e-25
Identities = 180/253 (71%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 10526 TGGTTGCCTAACGTTGGCACTGCGTCAGCTCCAGCTTACCCACTTTACTATGGTGACTTA 10585
||| |||| | || ||||| || | || |||| ||| || | || ||||| || |
Sbjct 348 TGGCTGCCAAGCGCAGGCACCGCTGCCGCACCAGTTTATCCGTTATATTATGGCGATCTT 289
Query 10586 TCACAAGCGGTAACTTTGTTTGACCGAGAAAATCTTTCATTACTGACTACCAACATTGGT 10645
|| || || | || |||||||||| || | | || | ||||||||||||
Sbjct 288 TCTCAGGCTGCCACACTGTTTGACCGTCAACAGATGAGCTTGGTTGTCACCAACATTGGT 229
Query 10646 GGTGGTGCCTTTGAAAAGGATCAAACTAAGATTCGTGTCATTGACCGTTTTGACGTTGAA 10705
| |||||| ||||| | ||||| |||||| | |||||||| ||||| || || || ||
Sbjct 228 GCTGGTGCGTTTGAGCATGATCAGACTAAGCTGCGTGTCATCGACCGCTTCGATGTGCAA 169
Query 10706 GCTACTGATACGGATGCCTTTGTTGCAGGCTCATTCAGTAAAATTGCTGACCAACCAGCC 10765
|| |||||| | ||||||||||| || || || ||| |||||||||||| | |||
Sbjct 168 GCAACTGATGCTGATGCCTTTGTGGCTGGATCGTTCTCCGCAATTGCTGACCAGCAAGCA 109
Query 10766 AACTTTGCAGCAA 10778
||||| ||||||
Sbjct 108 AACTTCCCAGCAA 96
>seq244515
Length=282
Score = 111 bits (122), Expect = 4e-20
Identities = 197/281 (70%), Gaps = 10/281 (4%)
Strand=Plus/Minus
Query 7022 TTTGTTGAACGGCATCGACTGGAAGTTGTTTTCTTTGGCTATGACGCG-TGGGGGCTAAC 7080
|||||||| ||| || || | || | | |||||| || || || |||| |||| |
Sbjct 278 TTTGTTGAGAAGCACCGGTTGAACGTCATGTGCTTTGGATACGATGCAATGGGTGCTACC 219
Query 7081 ACCTACAATCAAACAATTGGATTTGAATTCAGGCTGG---CCATTGCAAGCCATTCGGCA 7137
| | | ||||| || || | ||||| |||||| | |||| | || |||
Sbjct 218 CGC-ATGGTTAAACAGTTAGAGCTTAATTCTGGCTGGAATCTTTTGCCGGTCAA---GCA 163
Query 7138 ACGGACTAGTGAATTGAAGGATCCAACTAAGTTTTTGCAGACGATTTTTGTTGAAGGGTC 7197
||| ||| | || |||| || || |||||||||||||| ||||| ||| |||| ||
Sbjct 162 ACGAACTGGCGAGCTGAAAGACCCGACTAAGTTTTTGCAAACGATGTTTATTGAGAAATC 103
Query 7198 AGTTGACC-GATTCGATGATCGAATTATGGAAAAGGCATTACTAAATGCTGAAATTTATG 7256
| | || |||| || || ||| ||||| || ||||| || ||||| |||||||||
Sbjct 102 -GATCACTAGATTAGACGACAAAATCATGGAGAAAGCATTGCTTAATGCCAAAATTTATG 44
Query 7257 AAGACAAAATTGGTATTCAAGTCGATAAGGCTAAGGCCACG 7297
|||| || | || ||||||||||||||||| || || |||
Sbjct 43 AAGATAAGGTCGGAATTCAAGTCGATAAGGCCAAAGCAACG 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132978272367168
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