Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019489.1 Length=41726 Score E Sequences producing significant alignments: (Bits) Value seq220129 459 7e-125 seq185512 450 4e-122 seq114485 331 2e-86 seq25145 158 3e-34 seq219614 150 5e-32 seq57530 127 5e-25 seq244515 111 4e-20 >seq220129 Length=9922 Score = 459 bits (508), Expect = 7e-125 Identities = 304/337 (90%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 24192 ATGTTAGTGCCAATAAATTAACAGCTGGCACGATTGACTTTAATACAATTACTGGTAAAA 24251 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 488 ATGTTAGTGCCAATAAATTAACAGCTGGCACGATTGACTTTAATACAATTACCGGTAAAA 547 Query 24252 ATATCAACGCATCAAACATCACAACAGGAACACTCAGCACTGACCGGTTAAATGTCGACA 24311 ||||||||||||||||||||||||| |||| || | |||||||||||||||||| ||| Sbjct 548 ATATCAACGCATCAAACATCACAACGGGAAAGCTAAACACTGACCGGTTAAATGTTAACA 607 Query 24312 AACTATCAGCTTTAAGTGCCAATTTAGGTGATGTTACAACCGGCTCACTCAAAGGTGTCG 24371 | ||||||||| |||||| | ||||||||||| |||||||||||||||| ||||||||| Sbjct 608 AGCTATCAGCTGTAAGTGGCGATTTAGGTGATATTACAACCGGCTCACTTAAAGGTGTCA 667 Query 24372 ACATTGTGGCTAACACGTTTAGCACGCCTAATGGCTCATTTACAACCGATGCAAACGGTA 24431 ||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 668 ACATTATTGCTAAAACGTTTAGCACGCCTAATGGCTCATTTACAACCGATGAAAACGGTA 727 Query 24432 ATGTGGTGGCTAGCAATTTAACAATTAGAGGTGTTACTAACCTAGTTTATAATGCTGCAT 24491 |||||| |||||||| ||||||||||||||| ||||||| |||| ||||| || |||| Sbjct 728 GTGTGGTTGCTAGCAAGTTAACAATTAGAGGTATTACTAATTTAGTCTATAACGCAGCAT 787 Query 24492 TATTAGGTGGTAGTGGCTCCAGCATTCCGGGATGGGG 24528 |||||||||||| |||||| |||||||||||||| Sbjct 788 TATTAGGTGGTAATGGCTCATCTATTCCGGGATGGGG 824 Score = 343 bits (380), Expect = 4e-90 Identities = 403/548 (74%), Gaps = 30/548 (5%) Strand=Plus/Plus Query 25726 GGACGTTAAAAAGGCTGACACAGCTTATTGGGCGCAGCTAGTTAACTCAATTGATTTAGC 25785 ||| |||||||| ||||| || | |||||| | ||| | ||||| ||||| || |||| Sbjct 2001 GGATGTTAAAAAAGCTGATACTTCCTATTGGTCACAGTTGGTTAATTCAATCGACCTAGC 2060 Query 25786 CACTTATCAGTACAAAACAGACGATAATACCAGTCATTTGCGGCTGTCTAGCATTGTTGA 25845 || || ||||| ||| || |||||||| || | | | || || | |||||||| Sbjct 2061 AACGTACCAGTATAAAGATGATGATAATACTAGCAACCTTAGACTATCGGGGATTGTTGA 2120 Query 25846 CGACGTTAATGTAACAAAACAGTGGCAATTGCCAGACGTATTTATTAGTCGTGATGAAAA 25905 || |||||| || || ||||||||| |||| ||| | ||| || |||||| || | Sbjct 2121 TGATGTTAATACAAATAAGCAGTGGCAACTGCCGGACATCTTTGTTTCTCGTGACGAGGA 2180 Query 25906 CGGCAAGCTAAGTGGGGTGGATGATAGTGTGCTTTTAAATGCCACCCTAGCCACGGTACA 25965 || || ||| || | || ||| || ||| |||||||| |||| || |||| Sbjct 2181 TGGGAAACTAGCCGGAATTGAAAATACCGTACTTCAAAATGCCATGTTAGCAACTATACA 2240 Query 25966 GGAACAACAGAAGCAAATTGACCAACTAAACGGTCACAACATGGAATTGGAAGCTAGACT 26025 ||||||||| ||| ||||||||||| ||||||| || ||| ||| Sbjct 2241 GGAACAACAAAAGGAAATTGACCAATTAAACGGGCATTT------ATTAGAA-------- 2286 Query 26026 AAACAAATTGGAGGCCAAATTAAATGGATAGCATTTTGATTACAAATTACAAACCAGATT 26085 |||||||| |||||||||||||| |||||| || ||||| || |||||||| | Sbjct 2287 -------TTGGAGGCAAAATTAAATGGATAACATTTTAATCACAAACTATAAACCAGACT 2339 Query 26086 ACACGAACAACATTATGACCATTAGCGTTCAGATTAACACGCTGGGTATCAGTTCACAGG 26145 | ||||||||||||||||| ||||| ||||||||||||| || | ||||||||||||| Sbjct 2340 ATACGAACAACATTATGACTATTAGTATTCAGATTAACACACTAGCAATCAGTTCACAGG 2399 Query 26146 TCAGTATTACCATGGATGAATTTAACACTGCCATTGCTGGAGGTGCTGGTGGCATTGATA 26205 |||| ||||||||||| || ||||| ||||| |||| || |||||| |||||| Sbjct 2400 TCAGCATTACCATGGACGATTTTAATACTGCTATTG-TG--------GGTGGCGTTGATA 2450 Query 26206 GCGTTAAGTTAAAAGTATTAAATACTCTGATTGATAGCCTGACTGCTTTAAAGCCAGTTA 26265 |||||| | ||||| || || || |||||||| || ||||| |||||||||||||||| Sbjct 2451 ATGTTAAGCTGAAAGTGTTGAACACACTGATTGACAGTCTGACCGCTTTAAAGCCAGTTA 2510 Query 26266 CCACGACT 26273 || |||| Sbjct 2511 CCCTGACT 2518 Score = 138 bits (152), Expect = 3e-28 Identities = 142/189 (75%), Gaps = 15/189 (8%) Strand=Plus/Plus Query 24911 TTTAGTTCACCTATGCTAACCCAAACTGCTCAAGCTACTGGTTACCAGCCAGATACAGGT 24970 ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1213 TTTAGCTCACCTATGCTAACTCAAACTGCTCAAGCTACTGGTTACCAGCCAGACACAGGC 1272 Query 24971 AATGTTGTTAGCGCTGGCGAAATAGATGGCTCAGTTATCAATGGTTCAACCATTAATGGG 25030 |||||| ||| ||||| ||| || |||||| | | ||| |||| Sbjct 1273 AATGTTATTAATGCTGGAGAA---------------ATTAATGGTACCATTATTCATGGT 1317 Query 25031 ACAACGTTCCATGGTGGCGACAGTATTAGTGATTCTAATAATACGAGTAATTTTTATCCA 25090 |||| ||| ||||||| |||| ||||| |||| ||||| || ||||| ||||||| Sbjct 1318 TCAACATTCTATGGTGGTGACATTATTAACAATTCCAATAACACCGCTAATTATTATCCA 1377 Query 25091 TTCACCATT 25099 | || ||| Sbjct 1378 ATGACTATT 1386 >seq185512 Length=7282 Score = 450 bits (498), Expect = 4e-122 Identities = 374/456 (82%), Gaps = 6/456 (1%) Strand=Plus/Minus Query 23366 GATTTAAATGACCCCAATTTAATGAGTGTCATTGAAAAGCAGACCCAAGCAGC---ACAA 23422 ||||||||| | || || |||||||||||||||||||||||||| ||| | ||| Sbjct 821 GATTTAAATAATCCAAACTTAATGAGTGTCATTGAAAAGCAGAC---AGCGGTCAAACAG 765 Query 23423 TATGCCGGATTAACAAGTCAGTATAATGTGATTCTAGCCCGTGCTAAAGATGCCAGTATC 23482 |||||||||||||| || ||||| || |||||| |||||||||||||||||| ||||||| Sbjct 764 TATGCCGGATTAACCAGCCAGTACAACGTGATTTTAGCCCGTGCTAAAGATGACAGTATC 705 Query 23483 AGTACGACCGCTTTAACCACAGCCTATACTAACCTGAACACCTTTATGACGGCCATCTTA 23542 ||||| || | ||||||||| ||||||||||||||| ||| |||||| ||| || | || Sbjct 704 AGTACAACTGATTTAACCACGGCCTATACTAACCTGGACAACTTTATAACGCCCCTACTA 645 Query 23543 ACGGATACCACTAAGGCCAGTGATGTCAATCGGAACACTTATAAGAGCCTCACAGACGCT 23602 | ||||| |||||||| ||| | | | ||| |||||||||| || |||||| ||||| Sbjct 644 AAAGATACTACTAAGGCTAGTAAAATTGACCGGTACACTTATAATAGTCTCACATACGCT 585 Query 23603 TACAATATGGCTCTAAGCAATGTACAGACCGCCTTAAAGGACGCCTATAACACTGACATT 23662 ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| || ||| Sbjct 584 TACAATACGGCTCTAAGTAATGTACAGGCCGCCTTAAAGGACGCCTATAACACAGATATT 525 Query 23663 GATAACATGCAGTCTAGTGTTGCAGTGGCTAGTCAATCTGCTTCTAGTGCTGCTATAGTC 23722 ||||||| | ||||||||||||| ||||||||| | ||||||||||| ||||||||| Sbjct 524 AGTAACATGTATACTAGTGTTGCAGTAGCTAGTCAAGCCGCTTCTAGTGCCGCTATAGTC 465 Query 23723 GCTTCACAGGCAACGGTAACTGGCAATAGTGCTAGTCAGGTTGCATCACAAGCCGTTGTG 23782 |||||||||||| | |||||| ||| ||||||||| | ||| ||| ||| | | Sbjct 464 GCTTCACAGGCAGCTACAACTGGGGATAATGCTAGTCATGCTGCGGAACAGGCCCGTATA 405 Query 23783 GTAGCCAGTCAAGCTCAAAGTGCTGGTAACAATGCA 23818 | ||| || |||||||||| ||||||| | || ||| Sbjct 404 GCAGCTAGCCAAGCTCAAATTGCTGGTGATAACGCA 369 >seq114485 Length=730 Score = 331 bits (366), Expect = 2e-86 Identities = 509/722 (70%), Gaps = 7/722 (1%) Strand=Plus/Plus Query 6287 GCTATATTTGATGAAATTGGTGAAGT--AAAGACACGGCAAAAGATTTCCAAGATTGTAT 6344 ||||| ||||||||||| || ||||| |||| | || | ||||| || || || ||| Sbjct 3 GCTATTTTTGATGAAATCGGAGAAGTCGAAAGCCGCG--ATAAGATATCAAAAATCATAT 60 Query 6345 CAGGCCAAGTTAAAGTGCGTAATAAGCAGTTCATTCAAATATCAACAGCGTATCCTGATC 6404 | || ||||| ||||| || ||| || |||| || || ||||| ||||| | | Sbjct 61 CCGGACAAGTCAAAGTAAAGAACCGGCAATTTGTTCAGATTTCGACAGCTTATCCCAAAC 120 Query 6405 CAACCGTGCCATTCCACGATGATGAGCGTATGATTCAGCAAGCCATGGAACAAGATTATT 6464 | || || ||||| || || || |||||||||||||||||||| |||||||| Sbjct 121 CGGGTGTTCCTTTCCATGAAGACCAGAAGATGATTCAGCAAGCCATGGAGCAAGATTACA 180 Query 6465 TGCGCGATGCTGATACATATTTGGGACTTATTTGGTCGCAGGATAATCTGGACGAAACTT 6524 ||| || |||||||| || || |||||||||||| |||| || | ||| | || || | Sbjct 181 AGCGAGACGCTGATACGTACTTAGGACTTATTTGGGCGCAAGACAGTCTTAATGAGACGT 240 Query 6525 ATAAGCCTGATATGTGGGTTAAAAGTAATCCCTTGCTAGATTTACCGAGCCAACGAGAAG 6584 ||||| || | |||||||| |||||||| | | || || || ||| |||||| Sbjct 241 TCAAGCCCGAAACTTGGGTTAAGAGTAATCCACTATTGGACTTGCCTGATCAAAGAGAAG 300 Query 6585 TGTTGCTGAACGGCTTGACAGATAAGCGCGATTCTGACGCTTTGTCGGGTACACTCAACG 6644 |||| || | |||||| || ||||| ||| |||| | || | | | Sbjct 301 TGTTAATGCAAGGCTTGGTGGACAAGCGTGATAGTGACATGCTATCAAACAATATTGGAG 360 Query 6645 ATTTCCAAAATAAGAACCTTAACTTGTGGCTAGAACAATCGGTCGACAGCTTCTTAAAAC 6704 | || ||||| |||||||| || ||||||| || |||| || || | ||| |||| Sbjct 361 ACTTTCAAAACAAGAACCTGAATATGTGGCTGCAAGAATCATCAGATAGTTACTTGAAAC 420 Query 6705 TGCCTGACGTTGAAAAAGCCATCGTGCCATCATTTAGTTTTGACGATCGGCAAGTTTATA 6764 | | ||| |||| || || | || ||| | |||| | ||| | ||||||| Sbjct 421 TAGCGGACATTGAGCGGGCAATTATTCCTAGTTTTGATATTGATGGTCGTGATGTTTATA 480 Query 6765 TTGGTTTTGACTACTCAATGTTTAGTGATAACACGGCGCTAGCGTTTGTATTCCCTTATC 6824 | ||||||||||| || ||||| || |||||||| ||||| || ||||| || || ||| Sbjct 481 TCGGTTTTGACTATTCGATGTTCAGCGATAACACTGCGCTTGCTTTTGTTTTTCCATATG 540 Query 6825 GCGATAATAATGACAAACCACGATGGTTTATTTATCAGCATAGCTTTATTCCCTGGCAGA 6884 |||| ||| |||| || |||| ||| ||| ||| |||||||| ||||| | Sbjct 541 AAGATAGCGATGGGAAAC-AC--TGGTACATTGCTCAACATTCGTTTATTCCTTGGCAAA 597 Query 6885 AAGCTGGTTCGATTGAAGCTAAAGAAAAACAAGACGGTATTAATTATCGGGACTTAGCTA 6944 ||||||| || |||||||| || ||||| |||||||| ||| || || || | || | Sbjct 598 AAGCTGGATCAATTGAAGCCAAGGAAAAGCAAGACGGCATTGCCTACCGAGAGCTGGCAA 657 Query 6945 AAAAGGGATTTTGTACAATTAGTAGCCATCCGCAAGGACTGATTAATGACGAGCAGGTTT 7004 || | || ||||| ||||| | ||||||||||||||| | || ||||| || ||||| | Sbjct 658 AAGAAGGTTTTTGCACAATCACTAGCCATCCGCAAGGGATTATCAATGATGATCAGGTGT 717 Query 7005 AT 7006 || Sbjct 718 AT 719 >seq25145 Length=439 Score = 158 bits (174), Expect = 3e-34 Identities = 218/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 18332 AATGGTTTTGGTGCTACCGCTAGCCAAGTATCTGCTTGGATGCGTGTTATTGCACGTGAA 18391 |||||||||| ||| |||| |||||| |||| |||||||| ||||| |||||| Sbjct 2 AATGGTTTTGATGCCTCCGCATACCAAGTTGCTGCATGGATGCGAGTTATCCAGCGTGAA 61 Query 18392 TCAAATGGTAATCCAAGAGCTATTAACTTGTGGGATTCTAACGCTAAAAAGGGTATTCCA 18451 || ||||||||||| || || ||||||||||||||| ||||||||| || || || Sbjct 62 TCCAATGGTAATCCTAGGGCAATTAACTTGTGGGATAGCAACGCTAAAGCCGGCATACCT 121 Query 18452 TCAATGGGCTTAGTTCAAACTATTCGGCCAACATTTGAAGCATATAAATTTTCAGGACAT 18511 |||||||| | || ||||||||| ||||||| || | || | ||| ||| | || || Sbjct 122 TCAATGGGGCTTGTACAAACTATTGGGCCAACGTTCAATGCGTTTAAGTTTCCCGGCCAC 181 Query 18512 GGTCAGATTTATAATGGGTATGATGACTTATTAGCTGGGATTAACTATATGAAACATATA 18571 | ||||||| || ||||| || | | || || ||| |||| ||||| || Sbjct 182 AACGATGTTTATAACGGCTATGACGATCTGCTTGCCGGTATTCACTACATGAAGGCCATC 241 Query 18572 TATGGTAAAGGCGACAGTGCATTCGCTAGGGTAAGCGGCCCTGAAGGATATGCAAATGGT 18631 || || || ||| || ||| | || || ||||||||||| || || |||||| Sbjct 242 TACGGCTCTGGAAGTTCTGCCTTTGCTCGTGTCAGTGGCCCTGAAGGGTACGCCAATGGT 301 Query 18632 GGTTT 18636 || || Sbjct 302 GGCTT 306 >seq219614 Length=1033 Score = 150 bits (166), Expect = 5e-32 Identities = 192/263 (73%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 5823 TTAAA-TTCGCTTCCATATGTCCTAACGTTGATACTGGTGAACCAACTAAACTAATGCCA 5881 ||||| ||||| | || || || | || ||||| || || || || || || ||||| Sbjct 475 TTAAACTTCGCCGCTATTTGCCCGGATGTCGATACCGGAGAGCCTACCAAGCTCATGCCT 416 Query 5882 TGGCAAAAATTCATTATGGCTATGCTGATTGGTTGGCGTAATGATGACGGTGGTAAACGT 5941 ||||| || || || || || || || ||||||||| | |||||||||||||| Sbjct 415 TGGCAGGCTTTTATATTGTCTCAACTTATAGGCTGGCGTAATCAAGACGGTGGTAAACGG 356 Query 5942 TTTTCACGGGCTATTGTTTCCGTTGCGCGTGGCCAAGGTAAAACTTATCTTATGGCGATT 6001 ||| || || |||||| ||||| ||||| ||||| || || || | ||| | || Sbjct 355 TTTAGTCGTGCAATTGTTAGTGTTGCACGTGGTCAAGGCAAGACGTACATGATGTCAATC 296 Query 6002 ATCACTGCTTATAGCTATTTAATTGAATCGTTGGGACTGTCTAACCAAGATTACTTAGTA 6061 || | ||| |||||| |||||||| ||||| ||||||||||||||| ||||||| Sbjct 295 ATTGCGTGTTACTCATATTTAGTTGAATCGCTGGGATTGTCTAACCAAGATTTCTTAGTA 236 Query 6062 TCTTCTATTAATTACAAACAAAC 6084 | || ||||||||||| ||||| Sbjct 235 GCATCGATTAATTACAAGCAAAC 213 >seq57530 Length=397 Score = 127 bits (140), Expect = 5e-25 Identities = 180/253 (71%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 10526 TGGTTGCCTAACGTTGGCACTGCGTCAGCTCCAGCTTACCCACTTTACTATGGTGACTTA 10585 ||| |||| | || ||||| || | || |||| ||| || | || ||||| || | Sbjct 348 TGGCTGCCAAGCGCAGGCACCGCTGCCGCACCAGTTTATCCGTTATATTATGGCGATCTT 289 Query 10586 TCACAAGCGGTAACTTTGTTTGACCGAGAAAATCTTTCATTACTGACTACCAACATTGGT 10645 || || || | || |||||||||| || | | || | |||||||||||| Sbjct 288 TCTCAGGCTGCCACACTGTTTGACCGTCAACAGATGAGCTTGGTTGTCACCAACATTGGT 229 Query 10646 GGTGGTGCCTTTGAAAAGGATCAAACTAAGATTCGTGTCATTGACCGTTTTGACGTTGAA 10705 | |||||| ||||| | ||||| |||||| | |||||||| ||||| || || || || Sbjct 228 GCTGGTGCGTTTGAGCATGATCAGACTAAGCTGCGTGTCATCGACCGCTTCGATGTGCAA 169 Query 10706 GCTACTGATACGGATGCCTTTGTTGCAGGCTCATTCAGTAAAATTGCTGACCAACCAGCC 10765 || |||||| | ||||||||||| || || || ||| |||||||||||| | ||| Sbjct 168 GCAACTGATGCTGATGCCTTTGTGGCTGGATCGTTCTCCGCAATTGCTGACCAGCAAGCA 109 Query 10766 AACTTTGCAGCAA 10778 ||||| |||||| Sbjct 108 AACTTCCCAGCAA 96 >seq244515 Length=282 Score = 111 bits (122), Expect = 4e-20 Identities = 197/281 (70%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 7022 TTTGTTGAACGGCATCGACTGGAAGTTGTTTTCTTTGGCTATGACGCG-TGGGGGCTAAC 7080 |||||||| ||| || || | || | | |||||| || || || |||| |||| | Sbjct 278 TTTGTTGAGAAGCACCGGTTGAACGTCATGTGCTTTGGATACGATGCAATGGGTGCTACC 219 Query 7081 ACCTACAATCAAACAATTGGATTTGAATTCAGGCTGG---CCATTGCAAGCCATTCGGCA 7137 | | | ||||| || || | ||||| |||||| | |||| | || ||| Sbjct 218 CGC-ATGGTTAAACAGTTAGAGCTTAATTCTGGCTGGAATCTTTTGCCGGTCAA---GCA 163 Query 7138 ACGGACTAGTGAATTGAAGGATCCAACTAAGTTTTTGCAGACGATTTTTGTTGAAGGGTC 7197 ||| ||| | || |||| || || |||||||||||||| ||||| ||| |||| || Sbjct 162 ACGAACTGGCGAGCTGAAAGACCCGACTAAGTTTTTGCAAACGATGTTTATTGAGAAATC 103 Query 7198 AGTTGACC-GATTCGATGATCGAATTATGGAAAAGGCATTACTAAATGCTGAAATTTATG 7256 | | || |||| || || ||| ||||| || ||||| || ||||| ||||||||| Sbjct 102 -GATCACTAGATTAGACGACAAAATCATGGAGAAAGCATTGCTTAATGCCAAAATTTATG 44 Query 7257 AAGACAAAATTGGTATTCAAGTCGATAAGGCTAAGGCCACG 7297 |||| || | || ||||||||||||||||| || || ||| Sbjct 43 AAGATAAGGTCGGAATTCAAGTCGATAAGGCCAAAGCAACG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132978272367168