Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq27195 145 1e-29 seq146431 109 1e-18 >seq27195 Length=13093 Score = 145 bits (160), Expect = 1e-29 Identities = 431/658 (66%), Gaps = 10/658 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 |||||| |||| |||| ||| || || | ||||||| ||| || || ||| | | Sbjct 9319 AAACTCTCTCTCGATCTCCACAGCGTCGCACACAATCGACTTCACTCGCTCCTCCGTCAG 9260 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | || || | || |||| || ||| || || || | ||| ||||||||||| Sbjct 9259 CTTCGTTCGGAGAAGTGTG---TAGATCAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTC 9203 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | | |||| ||||| | |||||||||| ||| | | ||||||||| Sbjct 9202 TCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGCATGAGCCCTCGTTTTTTGAGCCA 9143 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 |||||| | ||| || ||||||||||| || || || |||||| ||| || Sbjct 9142 GAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCTTCGACGCACGCGAAAGCGACGAT 9083 Query 48280 CCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 | || |||||| | | || || |||||| | | ||||| | || |||| Sbjct 9082 TCGTTCAGCGAAAGTCTGAGATCCA-TC---GATCCATGTCATAGCCCATTGAGCTTTCT 9027 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 | || ||| || || || || || || |||||||| | | | ||| || Sbjct 9026 TAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGATGATCTCTCTCTTTGTTATCTT 8967 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || ||| || || ||||||||||| || | |||||| || ||||||| Sbjct 8966 TGATGTATGTATCCAGAAGGAGACTATACATCTCAGAATGGATATTCTCAATCGCGATCT 8907 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC- 48517 |||| |||||||| || | || ||| | || || || |||| ||||| ||| Sbjct 8906 GGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGTACATCTGACATGAATC-GAGAAGCG 8848 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 |||||||| || || || || || || || ||||| || ||||| ||||| | ||| Sbjct 8847 AGATTCTCTAGAACGATTCCGTCAGATGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAG 8788 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 || || || || | ||||| | |||| | || |||||| || || |||||| Sbjct 8787 TGACGTTCTCCGTCGTTGAGATTCTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCT 8728 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 || | |||||||| || || ||||| |||||||| |||| || | || |||| Sbjct 8727 TCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGT 8670 >seq146431 Length=15796 Score = 109 bits (120), Expect = 1e-18 Identities = 189/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||||||||| || | |||||| || ||||| || || |||||||| || | || || Sbjct 4419 TACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCG 4478 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGA 48543 | || || || |||| ||||| ||| ||||| || ||| || || || || Sbjct 4479 GAGACTTGTACATCTGACATGAATCGAGA-AGCGAGATTTTCGAGGACGATTCCGTCAGA 4537 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || |||||||| ||||| ||||| | ||| || || || || | ||||| | Sbjct 4538 TGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTC 4597 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | || |||||| || || |||||||| | ||||||||||| || || Sbjct 4598 CCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGC 4657 Query 48664 TTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 ||| |||||||| |||| || | || |||| Sbjct 4658 TTTCTTGTACATCTCCCAGATCTGTGGGTAGT 4689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928421154411520