Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019502.1 Length=44401 Score E Sequences producing significant alignments: (Bits) Value seq158858 145 2e-30 seq230105 86.0 2e-12 >seq158858 Length=235449 Score = 145 bits (160), Expect = 2e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 37617 AAGTGTCCTTATACAATGAATCCAAAATTTATCACAGTTCACAATACGTATAATGATGCG 37676 |||||||||||| | ||||| || | | || ||||| || || || |||||||||||| Sbjct 160030 AAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATAACACTTATAATGATGCG 160089 Query 37677 CCAGCTGAGAATGAAATTGCTTATATGATACGAAATAATAATGAGGTGTCATTCCACATT 37736 || ||| |||| || | ||| ||||| |||||| ||| ||||| ||||||||| | Sbjct 160090 CCTGCTAAGAACGAGGTAAATTACATGATCGGAAATACTAACGAGGTTTCATTCCACTTC 160149 Query 37737 GCAGTAGACGATAAAGAAGCTGTACAAGGCTTACCTTTAGAAAGGAATGCATGGGCTTGT 37796 |||||||| |||| |||| | | ||||| | || | || | ||||| ||| |||| Sbjct 160150 GCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATCGTAATGCTTGGCATTGT 160209 Query 37797 GGAGATGGGAATGGTTCAGGAAACAGAAAGTCGATTAGTGTGGAGATTTGTTATTCTTTA 37856 || ||||| |||| |||||| |||| || || |||| || || ||||| || ||| Sbjct 160210 GGTGATGGTGGTGGTAACGGAAACCGAAAATCTATCGGTGTTGAAATCTGTTACTCATTA 160269 >seq230105 Length=2871 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 1568 AAATGGACCTTATAGGATTTGAACCTATGACCGGACGGTTATGAGCCGTCTGCTCTGACC 1627 ||||||||| | |||| | |||||| |||||||||||||||||||||| ||||| ||| Sbjct 2797 AAATGGACCCTGCAGGACTCGAACCTGCGACCGGACGGTTATGAGCCGTCAGCTCTAACC 2856 Query 1628 AACTGAGCTAAAGGT 1642 | ||||||||| ||| Sbjct 2857 AGCTGAGCTAAGGGT 2871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141511108640968