Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq26767 208 8e-49 seq249645 141 1e-28 seq127984 89.7 5e-13 seq252826 84.2 2e-11 >seq26767 Length=1149 Score = 208 bits (230), Expect = 8e-49 Identities = 323/460 (70%), Gaps = 6/460 (1%) Strand=Plus/Plus Query 138494 ATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATT 138553 ||| | ||| || ||||||| | ||||| | | |||||||| | || | ||||| Sbjct 42 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 101 Query 138554 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138613 ||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || || Sbjct 102 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 161 Query 138614 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138673 || || | || ||| || || ||||| ||||| |||||| | ||||||||||| |||| Sbjct 162 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 221 Query 138674 AGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAAT 138733 ||||||| |||||||||| | |||| || | | ||| | |||| | |||||||| Sbjct 222 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 281 Query 138734 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGA---AGC 138790 | ||| | |||||||||||||| || |||| || | ||||| ||||| || || Sbjct 282 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 341 Query 138791 AGAAGCCTTATTGATAGACTTTAATGAATCACCTGCTTCAATAACAACGCATGAACTAAA 138850 || ||| ||| ||||| | || |||| | |||||| | ||| ||||| ||||| Sbjct 342 AGTAGCGTTA---ATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAA 398 Query 138851 CTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAGTGAAATCTGTCGAGT 138910 || ||||| ||||| | |||| |||||| || || || | ||||| | ||| Sbjct 399 TTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGT 458 Query 138911 AGATACTGCTTCATAAAAACGGATAACGTGTTTTAATCTA 138950 || | || | ||||||||| ||||| || | |||| Sbjct 459 TGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 498 >seq249645 Length=476466 Score = 141 bits (156), Expect = 1e-28 Identities = 272/401 (68%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 138501 TGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATTTTTCAAA 138560 || ||||| || ||||||||||||| |||||| ||||| ||||| ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 138561 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138620 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 138621 CGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138680 || | ||||| ||||| || ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 138681 ACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAATCATACCA 138740 |||||||| || ||||||| || || ||| |||||| || ||| Sbjct 264770 CAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCT 264711 Query 138741 ACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGCCTTA 138800 |||| || || || ||||| || | || | ||| || || | || | Sbjct 264710 GCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCG 264651 Query 138801 TTGATAGACTTTAATGAATCACCTGCTTCAATAACAACGCATGAACTAAACTGCCGAGTT 138860 |||||||| | ||| |||||| ||| || | ||||| || |||||||| || | | Sbjct 264650 TTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGAT 264591 Query 138861 GGAGTACGGCAACCAGCCATAATAGGAGTTGGCAGTGAAAT 138901 || ||||| ||| | ||| || || ||||| ||||| || Sbjct 264590 GGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 >seq127984 Length=21361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 69631 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 69690 ||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| | Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856 Query 69691 ACCATTATACGATATCCGCAAA 69712 |||| || || | | ||||||| Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834 >seq252826 Length=193385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 69379 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 69438 |||||| || || ||| ||||||| | |||||| || ||||||||| |||||||||||| Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963 Query 69439 ACTGAGCTAAATCAGC 69454 |||||||||| || || Sbjct 191962 ACTGAGCTAAGTCGGC 191947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530889499773920