Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019505.1 Length=166452 Score E Sequences producing significant alignments: (Bits) Value seq26767 208 8e-49 seq249645 118 1e-21 seq127984 89.7 5e-13 seq252826 84.2 2e-11 >seq26767 Length=1149 Score = 208 bits (230), Expect = 8e-49 Identities = 332/472 (70%), Gaps = 12/472 (3%) Strand=Plus/Plus Query 138618 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138677 |||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 138678 TTTGTTATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138737 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 138738 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 138797 ||| || || || || | || ||| || || || || ||||| |||||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 138798 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 138857 ||| ||||||||||| ||||||||| | |||| || | | ||| | |||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 138858 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 138917 |||||||| | ||| | |||||||||||||| || |||| ||| | ||||| ||||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 138918 TGA---AGCGGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAAC 138971 || || | ||| ||| ||||| | || || | ||||| | ||||| | ||| Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAAC 386 Query 138972 GCATGAACTAAACTGCCGGGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGA 139031 ||||| ||||| || || || ||||| | |||| |||||| || || || || || Sbjct 387 ACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 446 Query 139032 AATCTGTCGAGTAGATACTGCTTCATAAAAACGGATAACGTGTTTTAATCTA 139083 ||| | ||| || | || | ||||||||| ||||| || | |||| Sbjct 447 AATTTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 498 >seq249645 Length=476466 Score = 118 bits (130), Expect = 1e-21 Identities = 272/407 (67%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 138634 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138693 || || || || ||||||||||| | ||||| ||||| || || ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 138694 ACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138753 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 138754 CGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138813 || | ||||| |||||||| ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 138814 ACACCAGTATGGCGTACTTCACCCATGCCAATCTTAG---AACCTTCAGCACGAATCATA 138870 |||||||| || ||||||| |||| ||| ||| ||||| || | Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGA 264714 Query 138871 CCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG---AAGCGGAA 138927 || |||| || || || ||||| || | || | ||| || || | || || Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTG 264654 Query 138928 GCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTAAACTGC 138987 || |||||||| | ||| |||||| || || | ||||| || |||||||| Sbjct 264653 GC---GTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGA 264597 Query 138988 CGGGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 139034 || | ||| ||||| ||| | ||| || || ||||| | ||| || Sbjct 264596 CGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 >seq127984 Length=21361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 69971 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 70030 ||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| | Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856 Query 70031 ACCATTATACGATATCCGCAAA 70052 |||| || || | | ||||||| Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834 >seq252826 Length=193385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 69719 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 69778 |||||| || || ||| ||||||| | |||||| || ||||||||| |||||||||||| Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963 Query 69779 ACTGAGCTAAATCAGC 69794 |||||||||| || || Sbjct 191962 ACTGAGCTAAGTCGGC 191947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530739602162560