Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019511.1 Length=136326 Score E Sequences producing significant alignments: (Bits) Value seq149378 127 2e-24 seq151743 84.2 2e-11 seq28016 84.2 2e-11 >seq149378 Length=35185 Score = 127 bits (140), Expect = 2e-24 Identities = 335/494 (68%), Gaps = 18/494 (4%) Strand=Plus/Minus Query 109245 TCCATTACAGTAGAACCATGTAATCTAATGAATCCACGAGATGAATAGAATCCGTTAACA 109304 ||||| | ||| |||||||| || ||||| ||||| | ||| |||| | || || Sbjct 26429 TCCATAATAGTTGAACCATGCAACTTAATGTTACCACGTGCTGATAAGAAACGGTCAATG 26370 Query 109305 CTGAAACCAGTATTTACATTACCACTA--TTGTCTTGCATTAATTGCAT-TTGTCGACCT 109361 |||||||| || ||| ||||| | ||| | | | || | |||| |||| Sbjct 26369 TCTAAACCAGT--TTCCAT-ACCACCAGTTTGACCGGGAAGCATAATACGTTGTGCACCT 26313 Query 109362 AAGATATTAGTA-ACAAAGTCAGAATGTACACCGATAGGCATGTAAGCATCTGTAGCTGT 109420 ||| | || || | |||||||| | ||||| |||||||| |||||||| || || Sbjct 26312 AAG-TGTTGGTTGATAAAGTCAGCCTTAACACCAATAGGCATATAAGCATCAGTTGCAAC 26254 Query 109421 ACCAAAACCTTTACCGATTTTAACTGAAGCTAAGTTTAATAATT-TCTCATCTAAGTGAG 109479 ||| ||||||| ||| || ||||| | ||| ||| | | || | | | ||| | Sbjct 26253 ACCGAAACCTTCACCAATCTTAACAGCGGCTTTGTTAAGCACTTGTGGCGT-TAATTCTC 26195 Query 109480 CACCTTTAGCGTCGATAACGTTATCAGCATCAATTAA-TTTAGCTAGTCCATCAAATTCT 109538 |||||| | ||| || ||||| ||||||||| | ||| || || ||||||||||| Sbjct 26194 CACCTTCAAGGTCAATGTGGTTATGAGCATCAATAAGCTTTTGCAAG-CCATCAAATTCC 26136 Query 109539 AGTCCTTCTCCACCAACTTCAGAAGTTAATGAAGCATCACCATAGAATGAAGCCCATTCA 109598 || || || || | ||| |||||| || ||||||||||| |||||||||| Sbjct 26135 AGACCATCGCCCTTTTCACCAGCAGTTAAGTCAGAGTCACCATAGAAGATAGCCCATTCA 26076 Query 109599 ATTGTTTTAGCAACAACTGAGATAGCATCTTCAGT--CAAGATTTGACCAGGGTCAGCAA 109656 || ||||| |||| | | | || || | ||| | |||| ||||||||| || Sbjct 26075 ATAGTTTTGACAACGTTTTCCACGCCGTC--CATTTCCAAAACTTGAACAGGGTCAGTAA 26018 Query 109657 TGTTATTTACTAAACTAGAT-GCCAATGACATATTTTTAGTATCAGAAATGTATTTCATT 109715 || | ||| || | || |||||||| | | ||||||||| |||| |||||||| Sbjct 26017 TGGT-GTTAGCCAATTGCATAGCCAATGAGCTTTGCTTAGTATCAACAATGAATTTCATT 25959 Query 109716 GTAACGGTCTTTTG 109729 | | |||||||| Sbjct 25958 GAGATAGTCTTTTG 25945 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 120967 TATTTATTAAGGGTTTAGACTATATTATAGCCCTTAGTTTTGGTTAAGGGTTCTCTGCTT 121026 ||||||| |||| |||||||| || || | ||||||| || ||| | |||||| | Sbjct 19824 TATTTATATAGGGATTAGACTAAATCATGCTCATTAGTTTAGGATAATGAGCCTCTGCAT 19765 Query 121027 TACTTCTCTATAAAGAGTTTTCTTATCTAGTTCTCACTATCTCCATTTAGATAACTACCT 121086 |||| | || | || | |||||||| |||||| |||| |||||| ||| |||||| Sbjct 19764 TACTCCCCTTAATAGGGATTTCTTATAGAGTTCTTGCTATTACCATTTTAATAGCTACCT 19705 Query 121087 AGAAATTTAGTCGTTA 121102 || ||||||||||| Sbjct 19704 CTAAGTTTAGTCGTTA 19689 >seq151743 Length=442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/100 (79%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 121006 TTGGTTAAGGGTTCTCTGCTTTACTTCTCTATAA--AGAGTTTTCTTATCTAGTTCTCAC 121063 |||||| || |||||||||||||| || | | || |||||||||||| |||||||| Sbjct 442 TTGGTTGTGGTCCCTCTGCTTTACTTCCCTGTTACCAGGGTTTTCTTATCTGGTTCTCAC 383 Query 121064 TATCTCCATTTAGATAACTACCTAGAAATTTAGTCGTTAG 121103 || |||||| | ||||| ||||||||||||||||| Sbjct 382 TAGTACCATTTTACCAGCTACCCAGAAATTTAGTCGTTAG 343 >seq28016 Length=334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 109490 GTCGATAACGTTATCAGCATCAATTAATTTAGCTAGTCCATCAAATTCTAGTCCTTCTCC 109549 ||| ||| |||| ||| ||||| | || ||| ||||| |||| ||||||||| || Sbjct 295 GTCAATATGGTTAGCAGGGTCAATAAGCTTGAATAGACCATCGAATTGTAGTCCTTCGCC 236 Query 109550 ACCAACTTCAGAAGTTAATGAAGCATCACCATAGAATGAAGCCCATTCAATTGTTTTAGC 109609 | | |||||||| ||||||||||||||| |||||||||| ||| ||| | Sbjct 235 TTCTTGACCGGAAGTTAAGTCAGCATCACCATAGAACATAGCCCATTCATCTGTCTTAAC 176 Query 109610 AACAACTGAGATAGCA 109625 |||| | ||||||||| Sbjct 175 AACAGCAGAGATAGCA 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434658422591680