Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019511.1
Length=136326
Score E
Sequences producing significant alignments: (Bits) Value
seq149378 127 2e-24
seq151743 84.2 2e-11
seq28016 84.2 2e-11
>seq149378
Length=35185
Score = 127 bits (140), Expect = 2e-24
Identities = 335/494 (68%), Gaps = 18/494 (4%)
Strand=Plus/Minus
Query 109245 TCCATTACAGTAGAACCATGTAATCTAATGAATCCACGAGATGAATAGAATCCGTTAACA 109304
||||| | ||| |||||||| || ||||| ||||| | ||| |||| | || ||
Sbjct 26429 TCCATAATAGTTGAACCATGCAACTTAATGTTACCACGTGCTGATAAGAAACGGTCAATG 26370
Query 109305 CTGAAACCAGTATTTACATTACCACTA--TTGTCTTGCATTAATTGCAT-TTGTCGACCT 109361
|||||||| || ||| ||||| | ||| | | | || | |||| ||||
Sbjct 26369 TCTAAACCAGT--TTCCAT-ACCACCAGTTTGACCGGGAAGCATAATACGTTGTGCACCT 26313
Query 109362 AAGATATTAGTA-ACAAAGTCAGAATGTACACCGATAGGCATGTAAGCATCTGTAGCTGT 109420
||| | || || | |||||||| | ||||| |||||||| |||||||| || ||
Sbjct 26312 AAG-TGTTGGTTGATAAAGTCAGCCTTAACACCAATAGGCATATAAGCATCAGTTGCAAC 26254
Query 109421 ACCAAAACCTTTACCGATTTTAACTGAAGCTAAGTTTAATAATT-TCTCATCTAAGTGAG 109479
||| ||||||| ||| || ||||| | ||| ||| | | || | | | ||| |
Sbjct 26253 ACCGAAACCTTCACCAATCTTAACAGCGGCTTTGTTAAGCACTTGTGGCGT-TAATTCTC 26195
Query 109480 CACCTTTAGCGTCGATAACGTTATCAGCATCAATTAA-TTTAGCTAGTCCATCAAATTCT 109538
|||||| | ||| || ||||| ||||||||| | ||| || || |||||||||||
Sbjct 26194 CACCTTCAAGGTCAATGTGGTTATGAGCATCAATAAGCTTTTGCAAG-CCATCAAATTCC 26136
Query 109539 AGTCCTTCTCCACCAACTTCAGAAGTTAATGAAGCATCACCATAGAATGAAGCCCATTCA 109598
|| || || || | ||| |||||| || ||||||||||| ||||||||||
Sbjct 26135 AGACCATCGCCCTTTTCACCAGCAGTTAAGTCAGAGTCACCATAGAAGATAGCCCATTCA 26076
Query 109599 ATTGTTTTAGCAACAACTGAGATAGCATCTTCAGT--CAAGATTTGACCAGGGTCAGCAA 109656
|| ||||| |||| | | | || || | ||| | |||| ||||||||| ||
Sbjct 26075 ATAGTTTTGACAACGTTTTCCACGCCGTC--CATTTCCAAAACTTGAACAGGGTCAGTAA 26018
Query 109657 TGTTATTTACTAAACTAGAT-GCCAATGACATATTTTTAGTATCAGAAATGTATTTCATT 109715
|| | ||| || | || |||||||| | | ||||||||| |||| ||||||||
Sbjct 26017 TGGT-GTTAGCCAATTGCATAGCCAATGAGCTTTGCTTAGTATCAACAATGAATTTCATT 25959
Query 109716 GTAACGGTCTTTTG 109729
| | ||||||||
Sbjct 25958 GAGATAGTCTTTTG 25945
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 120967 TATTTATTAAGGGTTTAGACTATATTATAGCCCTTAGTTTTGGTTAAGGGTTCTCTGCTT 121026
||||||| |||| |||||||| || || | ||||||| || ||| | |||||| |
Sbjct 19824 TATTTATATAGGGATTAGACTAAATCATGCTCATTAGTTTAGGATAATGAGCCTCTGCAT 19765
Query 121027 TACTTCTCTATAAAGAGTTTTCTTATCTAGTTCTCACTATCTCCATTTAGATAACTACCT 121086
|||| | || | || | |||||||| |||||| |||| |||||| ||| ||||||
Sbjct 19764 TACTCCCCTTAATAGGGATTTCTTATAGAGTTCTTGCTATTACCATTTTAATAGCTACCT 19705
Query 121087 AGAAATTTAGTCGTTA 121102
|| |||||||||||
Sbjct 19704 CTAAGTTTAGTCGTTA 19689
>seq151743
Length=442
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/100 (79%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 121006 TTGGTTAAGGGTTCTCTGCTTTACTTCTCTATAA--AGAGTTTTCTTATCTAGTTCTCAC 121063
|||||| || |||||||||||||| || | | || |||||||||||| ||||||||
Sbjct 442 TTGGTTGTGGTCCCTCTGCTTTACTTCCCTGTTACCAGGGTTTTCTTATCTGGTTCTCAC 383
Query 121064 TATCTCCATTTAGATAACTACCTAGAAATTTAGTCGTTAG 121103
|| |||||| | ||||| |||||||||||||||||
Sbjct 382 TAGTACCATTTTACCAGCTACCCAGAAATTTAGTCGTTAG 343
>seq28016
Length=334
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 109490 GTCGATAACGTTATCAGCATCAATTAATTTAGCTAGTCCATCAAATTCTAGTCCTTCTCC 109549
||| ||| |||| ||| ||||| | || ||| ||||| |||| ||||||||| ||
Sbjct 295 GTCAATATGGTTAGCAGGGTCAATAAGCTTGAATAGACCATCGAATTGTAGTCCTTCGCC 236
Query 109550 ACCAACTTCAGAAGTTAATGAAGCATCACCATAGAATGAAGCCCATTCAATTGTTTTAGC 109609
| | |||||||| ||||||||||||||| |||||||||| ||| ||| |
Sbjct 235 TTCTTGACCGGAAGTTAAGTCAGCATCACCATAGAACATAGCCCATTCATCTGTCTTAAC 176
Query 109610 AACAACTGAGATAGCA 109625
|||| | |||||||||
Sbjct 175 AACAGCAGAGATAGCA 160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434658422591680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |