Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq158858 327 7e-85 seq125822 98.7 6e-16 >seq158858 Length=235449 Score = 327 bits (362), Expect = 7e-85 Identities = 720/1064 (68%), Gaps = 19/1064 (2%) Strand=Plus/Minus Query 21467 TCCTCCTTTTTATACTGCGCAAACTTCACATTCTTCTACCGATAATTTTCTAGTACGAGT 21526 ||||| | ||||||||| ||| | ||||||||||| | | | ||| ||||| || Sbjct 229822 TCCTCTCTCTTATACTGCACAAGCAATACATTCTTCTATAGTTGAATTTGATGTACGTGT 229763 Query 21527 GTAGTAAAGGCTCTTCAGACCTTTCTTGTACGCATATAAATAATACATAGCAAGCTCGTT 21586 |||||||||||||| || |||||||| | ||||| | ||||| |||||| || | Sbjct 229762 ATAGTAAAGGCTCTTAAGCCCTTTCTTTTCTGCATAGATGTAATAACGAGCAAGATCTCT 229703 Query 21587 TGTTGCGATATCACTATTTACATACAAAATAGTACTAATGCCTTGGTCAACGTGTGGTTG 21646 ||| | || || | | || | || |||| ||| |||||||| ||||| ||||| Sbjct 229702 TGTCGAAGTACCATTTGTAACGTGCAGAATACATGAAATACCTTGGTCTACGTGAGGTTG 229643 Query 21647 TATTTCTGCGATTAAGTCAATCAGTTTGTACATGCTC-ATATCGTAAGCAGGTTTATACA 21705 ||||| || ||||| ||||| | || | || || || || ||||||| || || Sbjct 229642 GATTTCAGCAATTAAATCAATAACCTTC-ATTTGGTCCATCTCATAAGCAGACTTGTAAG 229584 Query 21706 TTAAGAAATTCTGTTTAGATAAGTATGGAGCAGGGAAGTACGTTTCTGCATTTTGGTATG 21765 ||||| | ||||| |||||||| || || |||| || || || | || Sbjct 229583 AGAAGAATGTTTGTTTTGATAAGTAAGGCATTGGATAGTAAGTAGTCGCTTTATCAGTTG 229524 Query 21766 TTCTCGGTTCGATTTTATGCGTAATTGGCATAACCGATTGAGTAGCGTTCTGCACATATC 21825 | | ||| | ||||| |||||||| || | | ||||||||||| ||||||| Sbjct 229523 AACGAGTTTCTACTTTATCAACGATTGGCATTACGCTTGGTGTAGCGTTCTGTACATATC 229464 Query 21826 CAATACTTTGTGTAGGTGCAATTGCTAATCTATATCCGTTGTACATTCCTGTTAGCTTTA 21885 | ||||| | || |||||||| | ||| || || ||||| || | | | Sbjct 229463 CTGAGCTTTGATTCGGAGCAATTGCAAGTCTGTAAGAGTGGTACAAACCATCACGTTGAA 229404 Query 21886 CTGTATTACTTAATGCTAACCATTCTGCTTTACCCGGAATTTCGATTCCTTCAAACAGCT 21945 || || ||| | ||| || || | ||||||| || |||||||| || | Sbjct 229403 CTTGCTTCATTAGACGTTCCCAATCCGCAGTTGTTGGAATTTGAATACCTTCAAATAGTT 229344 Query 21946 TTTTAACTTTCTCTGTTTTAGGTGAGAAGTCATTAACTAAATACTTATCGAAATATTTTC 22005 | |||||||| || | || |||| |||| || | ||||||||| || ||||| | | Sbjct 229343 TCTTAACTTTTTCAGATTGAGGTAAGAATTCTGTTGTTAAATACTTCTCAAAATAAGTAC 229284 Query 22006 CGGAAGCATAATCCGATTTCTCGAATCCTTTAAATGTTTCACCT-TTTCTCAATGCTATT 22064 | ||||| || |||||||||||||||| ||| | | | ||| ||||| | || || Sbjct 229283 CTTTTGCATACTCAGATTTCTCGAATCCTTCAAAAGATACTCCTCTTTCTTTA-GCAATC 229225 Query 22065 TCTGCG--CTTGCTTCAATTGAGTAATAGTTCAACATCATGAAGAATGTACGAGCAAAGT 22122 |||| ||| ||| || |||| |||||||| ||| |||||| ||||||||||| Sbjct 229224 TCTGTAGACTT--TTCGATAGAGTGATAGTTCAGCATTGCAAAGAATACACGAGCAAAGT 229167 Query 22123 CTTTCGCTTCTTCAGATTCATAAGCAATCAAGTTTTTAGATAAGTAGCCATGTAAGTTCA 22182 |||| || ||||| ||||| || | ||| ||||| |||| | | | ||||| | ||||| Sbjct 229166 CTTTTGCATCTTCTGATTCGTATGGAATGAAGTTCTTAGCAAGGAATCCATGAAGGTTCA 229107 Query 22183 TAGCTCCTAATCCTACTGAATGTAATTCTTCATTTGCTTTTTTAACACCTGGGGCGTTTT 22242 | | ||| | |||||||| |||||| |||| ||||| |||||||| || ||||||| Sbjct 229106 TTGTTCCAAGACCTACTGAGTGTAATGTAGCATTCGCTTTCTTAACACCAGGAGCGTTTT 229047 Query 22243 GGATCACCGACATATCTGATACCGCAGTTAATGCGTACATTGCATTATGGATA--ATCAT 22300 ||| ||| |||||| || | ||||| | ||| || |||| | | || | Sbjct 229046 CGATACAAGACTTATCTGTAACATCTGTTAACATTTCCATACCAGTATGTACAGCTTCTT 228987 Query 22301 ACGTAGTCGCTTGTCTTCCATTACGTTTACGATGTTTAGTGAACCTAAGTTACAGCTAAT 22360 || |||| |||||||| ||||| ||||||||||||||||| ||| ||| Sbjct 228986 --TTACATCTTTGTTCTCCATTACATTTACAATGTTTAGTGAACCTAATACACAAGAAAT 228929 Query 22361 ATCGTTACGAATAATGTCTTCTTCTCCATAATCCGTAATT--GTTGATACTTCGGATAGT 22418 ||| || || ||| | ||||| ||||| | | | || | ||| Sbjct 228928 ATCATTCTTGATCCAGTCCGCGATATTGTAATCGTTAATTACGCTTGT-CTCCATATA-C 228871 Query 22419 TGGAAGATTTCTGTACAAAGATTAGACATTTTAACTTCGCCTATTTCGCTAAGTGGATGA 22478 || || || || ||||||||||||||||||||||| |||||| || | | |||||| Sbjct 228870 TGAAAAATCTCAGTACAAAGATTAGACATTTTAACGCCGCCTAAATCTTTTAATGGATG- 228812 Query 22479 TTGTCTCCATTTGCATTCCCTTTGTACATTAAGTACGGGTATCC 22522 ||| | |||| || || ||| | ||| || || || || || Sbjct 228811 TTG--TTCATTCGCGTTTGTTTTATTCATAAAATAAGGATAGCC 228770 Score = 125 bits (138), Expect = 4e-24 Identities = 270/400 (68%), Gaps = 4/400 (1%) Strand=Plus/Minus Query 22764 CCGATTGACATAGATTGAATTCTGCTCTTTTCATCTACGTTAATTCGTTTTGTATCTAAC 22823 || || || | ||||||||| | |||| ||||| | || | | ||||| ||| | Sbjct 228546 CCAATAGATAAAGATTGAATACGTGTCTTCTCATCGGCATTTACTTTTTTTGAATCAAGG 228487 Query 22824 ATGCGGATAATGTCCATATGGAAGATATTTAAGTAAGTTGCTCCTGCACCTTTTCGCTGT 22883 | || | |||| ||||||||| |||||||| | ||||| ||||| ||| ||| Sbjct 228486 AATTCAATTAAGTCCCAATGGAAGATGTTTAAGTATGCAGCTCCGGCACCCGGTCGTTGT 228427 Query 22884 CCTAATTGGTTTGCGTAAGAGAATGCATCTTCTAATAACTTCATTACTGGAACAATACCG 22943 || | ||| || ||||||||||| ||| || | |||||||||||| || | | ||| Sbjct 228426 CCAAGTTGATTAATGTAAGAGAATGAATCCTCCATTAACTTCATTACCGGTAATACACCA 228367 Query 22944 CTACTTGCTCCCTCGATTTCTTTAATCGGGTCTGAAGTAGCTCTTATTTTAGATAAGTTT 23003 ||| || ||| || ||||||| | || | | | | | || |||| |||||| Sbjct 228366 CTAGCAGCGTTCTCAATACCTTTAATAGCTTCAGTACGACCACGTAATTTACTTAAGTTA 228307 Query 23004 AATGCTACTCCACCGCCAATTTTCGATAACTGCATTGCT-TTGTTAA-TTGCAAATCCAA 23061 | || | ||| || |||||||| |||||||| ||||| || ||| ||| | | || Sbjct 228306 ATCGCAATTCCTCCACCAATTTTAGATAACTGTTTTGCTACTGATAAGTTGTAGTT--AA 228249 Query 23062 TTCCGTTTAAATCGTCCCCAACTTCAGTAAGGAAGCATGATACTAATTCACCACGTCTTG 23121 | | ||||| ||| | | ||| |||||||| |||||||| ||| | | Sbjct 228248 TACTATTTAATGAGTCATCCATTTCTAATAGGAAGCAACTAACTAATTCCCCAGCACGAG 228189 Query 23122 CTTTTCCACTATTTAAGAAGGTAGGCGTTGCGGGTTGATA 23161 |||| ||| |||||| | || || || || ||||| || Sbjct 228188 CTTTACCAGAATTTAAATATGTTGGTGTAGCAGGTTGGTA 228149 Score = 104 bits (114), Expect = 1e-17 Identities = 131/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 20111 ACATTCATTGCTTTTACATAACCATTTCCCTTTTGAGAGAAGAAGTCATGATTCTTAGTT 20170 || || || ||||||||||| |||||||| || ||||||||| ||||| | || ||| Sbjct 230802 ACGTTAATGGCTTTTACATATCCATTTCCTTTAACAGAGAAGAAATCATGTTGTTTCGTT 230743 Query 20171 TGTGTATCTAATCCGTTCTTAACAATTGGATT---AATTTCTTCTTCCGGATATGGAGCT 20227 | ||| | || ||| || | ||| |||||||| | || || || ||| | Sbjct 230742 TTTGTTTGTAGTCCATTTTGAACGATTGGATTTACATACTCATCATCAAAGTATTG---G 230686 Query 20228 TCATACCCTAAGTTCATCATTGCTTTATTTGCGTTGTAACGAGTGAACTTGTTAACATC 20286 || || ||||| ||||||||||||||||||||||| ||||| |||||| || || || Sbjct 230685 TCGTATCCTAAATTCATCATTGCTTTATTTGCGTTATAACGTAGGAACTTATTTACTTC 230627 >seq125822 Length=25115 Score = 98.7 bits (108), Expect = 6e-16 Identities = 175/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 78365 ATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCC 78424 ||||||| || ||||| || || || | || || | ||| || || ||||| || Sbjct 8341 ATGATTCGAATAGATATGCGCATCCCCTAACGTATGCACGAAATCCCCAACTTCAAGCTT 8282 Query 78425 GCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCC 78484 || | ||| ||||| || || || || || ||||| |||||||| |||||||||| || Sbjct 8281 ACAGACATGAGCAATCATGTGCGTCAGCAAAGCGTAAGAAGCAATATTAAATGGAACACC 8222 Query 78485 TAAGAATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGATAC 78544 ||| || || || | |||||||| | ||||| | |||||| | | || Sbjct 8221 TAAAAAGACATCGGCAGACCGTTGGTAAAGCTGGCACGACAACTTTCCGTTCGCG---AC 8165 Query 78545 GTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAGTCAGCAGGATT 78604 ||||| || || || ||| || ||||| | ||||| || ||||| | | | ||||| Sbjct 8164 ATAAAATTGAAACAGCAGGTGGCAGGGCGGCAAGGCCATCTCTTCTAATTGACCGGGATT 8105 Query 78605 CCAAGCAGACACAAT 78619 ||||||| ||||| Sbjct 8104 CCAAGCACTGACAAT 8090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299182426530400