Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 684 0.0
seq218717 183 3e-41
>seq28607
Length=83266
Score = 684 bits (758), Expect = 0.0
Identities = 727/955 (76%), Gaps = 8/955 (1%)
Strand=Plus/Minus
Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGC---TTCAT 8345
|| |||||||| ||| | |||||||| ||| || ||| |||| || || | || ||
Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACCGCAAC---TTCCGTTTTTAT 1405
Query 8346 TACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGG 8405
|| ||||||| ||||||||||||| || || || || || || || ||||| ||| ||||
Sbjct 1404 TATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGG 1345
Query 8406 ATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAAT 8465
|||||| | ||||| ||||| || || || ||||| || |||| | ||| || ||
Sbjct 1344 ATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTAT 1285
Query 8466 TGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGG 8525
||| | || || ||||| ||||||||||| || || ||||||| ||||| ||||||||
Sbjct 1284 TGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGG 1225
Query 8526 TGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCG 8585
|||||||| | || | ||| | ||||| | ||||| || | ||||||||||||
Sbjct 1224 CGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCG 1165
Query 8586 TGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGC 8645
||| ||||||||| || ||| || || |||||||||||||| ||||||||| || ||
Sbjct 1164 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 1105
Query 8646 TCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTC 8705
||||||||| ||||| ||||||| ||| | |||| || |||||||||| || ||
Sbjct 1104 TCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTC 1045
Query 8706 TGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGA 8765
||||||||||||||| || ||||| ||||| ||||||| |||| |||| |||||||||||
Sbjct 1044 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGA 985
Query 8766 GCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATC 8825
||||||||| || |||||||| || |||||| | ||||| |||||||| |||||||| ||
Sbjct 984 GCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTC 925
Query 8826 TCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGA 8885
|| ||| || ||||||||||| | || |||||| || | | || ||||| ||
Sbjct 924 CCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 865
Query 8886 AACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGT 8945
|| || ||| || | || ||||| ||||| |||||||| |||||||||||||||||
Sbjct 864 AAATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGT 805
Query 8946 TGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAG 9005
|| |||||||| || ||||| || ||||||||||||||||| ||| ||||||||| |
Sbjct 804 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCG 745
Query 9006 AAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGG 9065
|| ||||||||| | || || ||||| || || || || |||||||| || | ||
Sbjct 744 TTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGG 685
Query 9066 CGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGG 9125
| ||||||||||||||||| ||||| ||||| |||||||| || | | || |
Sbjct 684 TATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG 625
Query 9126 ACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGA 9185
|||||||| || | || || ||||| || | ||||||| || || ||||||||
Sbjct 624 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 565
Query 9186 AGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGAG 9240
||| ||||| ||| | || || ||||||||||| || ||||| || |||| ||||
Sbjct 564 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
Score = 578 bits (640), Expect = 4e-160
Identities = 727/998 (73%), Gaps = 0/998 (0%)
Strand=Plus/Plus
Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874
||||| || | ||||||||| | | || ||||| |||||||| |||||||||||
Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463
Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934
||| | || ||||| ||| ||| | || | || || ||| | || || || || |||
Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523
Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994
|| || ||||| ||||| ||| | || ||| || | || ||| ||||| |
Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583
Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054
|| || || || || || |||||| || | | | |||||| | | |||| ||||||
Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643
Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114
||||| | || |||||||| || ||| || | || || || |||||||||||
Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703
Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174
|| |||||||| || ||||| ||||| || ||||||||||| || ||||| || || ||
Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763
Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234
| || | | |||||||| ||||| ||||| || ||||| || ||||||||||||||
Sbjct 32764 TCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 32823
Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294
||| ||||| || |||||||| || || ||| |||||||||||||||| ||||| ||
Sbjct 32824 TCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 32883
Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354
|| ||||| || || || ||| | ||||| |||| || |||||||||||||| | ||
Sbjct 32884 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 32943
Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414
|| || |||||||||||||| || ||| ||||||| | || || |||| || || ||
Sbjct 32944 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCAT 33003
Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474
|| | ||||||||||| || | | | ||||||| || ||||| || ||| |||
Sbjct 33004 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 33063
Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534
||| | ||||||| ||||| || ||||| ||||| || |||||||| || |||||
Sbjct 33064 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCA 33123
Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594
|| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||||
Sbjct 33124 CAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 33183
Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654
|| || | ||| | |||| | || ||||| | | || || ||| | || || |||
Sbjct 33184 CCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGT 33243
Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714
|| || || || || || || || ||| | || | |||||||| ||||||||||| |||
Sbjct 33244 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTC 33303
Query 10715 TATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAA 10774
||||| || ||||| ||| | ||||||||| ||||||| |||||||| | || ||
Sbjct 33304 TATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 33363
Query 10775 CCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812
|| || |||| | || | ||||| || || ||||| ||
Sbjct 33364 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 33401
>seq218717
Length=448
Score = 183 bits (202), Expect = 3e-41
Identities = 174/221 (79%), Gaps = 1/221 (0%)
Strand=Plus/Minus
Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633
||||||| ||||||| ||||||||| || | || || |||||||||||||| |||
Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGT 168
Query 8634 TGCATACTCTGCTCCTGTT-GCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTC 8692
|||||| || ||||||||| || |||||| || ||| ||| | | ||||| ||||||
Sbjct 167 TGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTC 108
Query 8693 AAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTG 8752
|||| || | | ||||||||||||| || ||||| |||| ||||||| ||| |||
Sbjct 107 AAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTG 48
Query 8753 TCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCAC 8793
| |||||||||||||||||||| || |||||||| || |||
Sbjct 47 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514754776032000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |