Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq158858 172 8e-38 seq135106 163 4e-35 seq111334 134 2e-26 >seq158858 Length=235449 Score = 172 bits (190), Expect = 8e-38 Identities = 485/733 (66%), Gaps = 19/733 (3%) Strand=Plus/Plus Query 173011 AAATCATGATTAATCAGGAATATCAACCTGCTACCCCGACATTCTCAAACGCTGGAAAAC 173070 ||||||||| | || | || ||||||||||| || |||| | ||| |||| ||| Sbjct 228132 AAATCATGA---AGCAAAATTACCAACCTGCTACACCAACATATTTAAATTCTGGTAAAG 228188 Query 173071 TTAAAGGTGGTGAATTGGTATCATGTTTCTTAGATGAAATCGGTGATTC-TAAAGTTGGA 173129 | | ||| ||||| || || ||| || ||||| | ||| || | || | | | Sbjct 228189 CTCGTGCTGGGGAATTAGTTAGTTGCTTCCTATTAGAAATGGATGACTCATTAAATAGTA 228248 Query 173130 ATATCCAAATCTATTCAAGCCGCATTGGATTTATCTTCGATGGGTGGAGGTGTATCGTTT 173189 || | | | || ||| | ||| | |||||| || |||||||| | || || Sbjct 228249 TTAACTACAACTTATCA-GTAGCAAAACAGTTATCTAAAATTGGTGGAGGAATTGCGATT 228307 Query 173190 AACGTATCTAAATTACGTGCACGTGGTGAAGCTATTAAAGGAATCGACGGAAG-AGCTTC 173248 ||| || ||||||||||| ||| ||||||||||||||| || || | | | ||| Sbjct 228308 AACTTAAGTAAATTACGTGGTCGTACTGAAGCTATTAAAGGTATTGA-GAACGCTGCTAG 228366 Query 173249 AGGTGTTTTACCAGTAATGAAAATCCTTGAAGATGCTTTTTCATATGCTAATCAATTAGG 173308 ||||| ||||| |||||||| | | || ||| | || || || ||||||| | || Sbjct 228367 TGGTGTATTACCGGTAATGAAGTTAATGGAGGATTCATTCTCTTACATTAATCAACTTGG 228426 Query 173309 ACAACGTCCAGGTGCTGGAGCTGCTTATATCAATATCTTCCATTCAGATGTTGAAGAATT 173368 |||||| || ||||| |||||||| || | || |||||||||| || | ||||| Sbjct 228427 ACAACGACCGGGTGCCGGAGCTGCATACTTAAACATCTTCCATTGGGACTTAATTGAATT 228486 Query 173369 TCTAGATTCTAAGAAAATCAACGCTGACGAAAAATCACGTCTTAAATCGCTTTCGTTAGG 173428 || ||||| || ||| | || || || || || ||||| || |||| | || | || Sbjct 228487 CCTTGATTCAAAAAAAGTAAATGCCGATGAGAAGACACGTATTCAATCTTTATCTATTGG 228546 Query 173429 TGTTATCGTT--CCTGACAAA-TTCATGGAATTAGCTGAGAAGGATGAACCATTTTATGT 173485 ||| ||| | || ||| ||| | | |||||||| | | || | ||| | Sbjct 228547 -ATTA--GTTACACCGAGAAAGTTCTTCCAGTTAGCTGAACAAAACAAAGAGATGTATCT 228603 Query 173486 TTTCTATCCATATACAGTTAAGAAAGAATACGGTAAACATCTAGATGATTTGGATATCGA 173545 || || ||| ||| | |||| || || || ||||| ||| ||||| | || Sbjct 228604 ATTTGCACCTGCTACTGTTTATAAAGCTTATGGAGTTCACCTAGACGATATGGATTTAGA 228663 Query 173546 TACAATGTATTCCGAATTAGTTTCTAATCCTAATGTTAAGAAACGTAAGTTAAATGCTAG 173605 | | ||| ||| |||||| | || |||| ||| |||||||||||| | || Sbjct 228664 TGAGAAATATGACGAGTTAGTTGCAAACCCTATGGTTCGTAAACGTAAGTTAGACCTTAC 228723 Query 173606 A---CGT---ATGTTAACTAAGATTGCACAAGTTCAGAAAGAATCAGGTTATCCATATTT 173659 | ||| |||||| |||||| ||| |||| |||||| || ||||| ||||| Sbjct 228724 AGCTCGTGAGATGTTAGTTAAGATCGCAACGATTCAATTAGAATCTGGCTATCCTTATTT 228783 Query 173660 CTTCTTGAAAACTAATGCTAACGAATATCATCCTTTGAAGAATTTGGGAGACGTTAAGTT 173719 | ||||| || || || ||| | ||||| || || |||| || | |||||| | Sbjct 228784 TATGAATAAAACAAACGCGAATGAACAACATCCATTAAAAGATTTAGGCGGCGTTAAAAT 228843 Query 173720 TTCTAATTTATGT 173732 |||||| | ||| Sbjct 228844 GTCTAATCTTTGT 228856 >seq135106 Length=379 Score = 163 bits (180), Expect = 4e-35 Identities = 232/323 (72%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 172990 AAAAAGCTTTAGCACAAGCTGAAATCATGATTAATCAGGAATATCAACCTGCTACCCCGA 173049 |||||||| | | | |||||||| ||||| ||||| |||||||| ||||||||||| | Sbjct 62 AAAAAGCTATCCAATATGCTGAAATAATGATCAATCAAGAATATCAGCCTGCTACCCCCA 121 Query 173050 CATTCTCAAACGCTGGAAAACTTAAAGGT---GGTGAATTGGTATCATGTTTCTTAGATG 173106 |||||| || ||||||||| ||| || || ||| | || || |||||| | |||| Sbjct 122 CATTCTTGAATGCTGGAAAA---AAACGTTCTGGAGAACTCGTTTCTTGTTTCCTGGATG 178 Query 173107 AAATCGGTGAT--TCTAAAGTTGGAATATCCAAATCTATTCAAGCCGCATTGGATTTATC 173164 |||| || || ||| || || || | | || | | ||||| || | ||||| Sbjct 179 AAATAGGAGACAATCTGAAC--GGTATTGGCTATGCTGTCGACTCCGCAATGAAATTATC 236 Query 173165 TTCGATGGGTGGAGGTGTATCGTTTAACGTATCTAAATTACGTGCACGTGGTGAAGCTAT 173224 ||||| |||||||| ||||| ||||| | || ||| | || ||||||||||| | || Sbjct 237 GTCGATAGGTGGAGGCGTATCCTTTAATATCTCAAAAATCCGCGCACGTGGTGAGTCGAT 296 Query 173225 TAAAGGAATCGACGGAAGAGCTTCAGGTGTTTTACCAGTAATGAAAATCCTTGAAGATGC 173284 ||||| | || || | ||| ||||| ||||| | ||||| || | | |||| | Sbjct 297 AAAAGGTGTAGATGGCCGTGCTGGTGGTGTATTACCTATCATGAAGATTATGGCAGATAC 356 Query 173285 TTTTTCATATGCTAATCAATTAG 173307 ||||| ||||| |||||| ||| Sbjct 357 ATTTTCCTATGCCAATCAACTAG 379 >seq111334 Length=48914 Score = 134 bits (148), Expect = 2e-26 Identities = 396/605 (65%), Gaps = 13/605 (2%) Strand=Plus/Minus Query 139439 AAAGGAATTATTTTAGCAGGTGGGTCTGGGACCCGCTTGCATCCATTGACTATCAGTGTT 139498 ||||| || ||| | ||||||||| || || | ||| | || | || | ||| Sbjct 29335 AAAGGTATCATTCTTGCAGGTGGGAGCGGTACTAGATTGTACCCCCTTACCCAAATTGTA 29276 Query 139499 TCGAAACAGTTATTACCTGTATACGATAAACCAATGATTTACTATCCATTGACAACTCTT 139558 || || || ||||||||| | || |||||||| |||||||| ||||| || || || Sbjct 29275 TCAAAGCAATTATTACCTATCTATGATAAACCCATGATTTATTATCCTTTATCAGTACTA 29216 Query 139559 ATCGAAGCTGGTATAAACGAAATACTTATAATATCAACACCACAGGATAGAAATTCTTTC 139618 || || || |||| || ||||| || || ||||||||||| |||| ||| || Sbjct 29215 ATGTTGGCGGGGATAAGAGAGATACTAATTATTTCAACACCACAAGATATTAATAAATTT 29156 Query 139619 GAGAACTTACTAGGTAACGGTTCACAATTTGGTGTTAGAATAGAATACGCTGTTCAAGAA 139678 ||| | | ||||| | |||||| ||| ||| ||| | ||| ||||||| Sbjct 29155 GAGCAAATGTTAGGTGATGGTTCAAAATATGGAATTACTCTTTCATATACTGTTCAGCCT 29096 Query 139679 AAACCTAATGGTTTAGCACAAGCTTTCGTTATCGGTGAAGAATTCATAGGTAAATCTAAA 139738 | || | ||| |||||||||| || | |||| ||| || || || || || ||| Sbjct 29095 TATCCAGAAGGTATAGCACAAGCATTTATAATCGCTGAGGAGTTTATTGGAAATGATAAT 29036 Query 139739 GTAGCTCTGATTTTAGGTGACAACATTTTCCATGCTTCTAATATAGATAG-ATTACTTAT 139797 |||||| | ||| | || || || || || ||| | | || | || |||||| Sbjct 29035 GTAGCTTTAATTCTTGGCGATAATATCTTTTATGGTCATGGACTA-ACAGAATTACTAGA 28977 Query 139798 GGAAGCTAATATGTCTGATAA----AAATACGATATTTGCATATCGTGTAAATGATCCTC 139853 | ||| || | || || | ||| | |||| ||| ||| |||||||| Sbjct 28976 AAAGGCTGTTAAG-AAGAAAAGGGGAGCTACAGTTTTTGGTTATTATGTCAATGATCCAG 28918 Query 139854 AGAGATATGGTGTAGTTGAATTCGATGAATATGATAACGCTG---TTTCGATCGAAGAAA 139910 || | | ||| ||||| || || ||| | | | || || || ||| |||| Sbjct 28917 AGCGTTTTGGAGTAGTAGAGTT---TGATTCTAAAAAGCATGTAATTAATATCATGGAAA 28861 Query 139911 AACCTTTGAATCCTAAATCTAATTACGCAGTACCAGGCTTATATTTCTATAATAACGATG 139970 | || | | || ||||| || || |||||| | || | ||||| ||| |||| || Sbjct 28860 AGCCAAAGGAACCAAAATCAAACTATGCAGTAACTGGTCTGTATTTTTATGATAAACGTG 28801 Query 139971 TTATCGAAGTAGCTAAGACTATCAAACCTTCAGCTCGTGGAGAATACGAAATATCAGATA 140030 | || ||| |||| || || || ||||| || ||||||||||| || ||| |||||| Sbjct 28800 TGATAGAAATAGCAAAAACCATAAAACCGTCTAGTCGTGGAGAATTAGAGATAACAGATA 28741 Query 140031 TTAAC 140035 | ||| Sbjct 28740 TAAAC 28736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699517933932160