Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq56932 134 3e-26 seq249645 93.3 9e-14 >seq56932 Length=160465 Score = 134 bits (148), Expect = 3e-26 Identities = 248/361 (69%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 48481 CTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTA 48540 || ||| |||||||| ||||| |||||||| || ||| |||||||| || | || Sbjct 88092 CTTTAATCGCTGGTACTAAATATCGTGGTGATTTTGAAAAACGTATGAAATCGCTGCTTG 88151 Query 48541 AAGAACTTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGG 48600 | | |||||| ||| | ||||| || |||||||||||||| | ||||| || || | Sbjct 88152 ATGCACTTAAGAAAAAACCAAATGCCATCTTGTTCATTGATGAGATCCATATGATTATTG 88211 Query 48601 GTGCTGG-TGGT--AGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCAC 48657 | || || | || | |||| | ||||||| || ||| | || ||||| |||| Sbjct 88212 GCGCAGGGTCGTCAATGAGCAGTAA---TATGGATGTGTCAAATCTGATCAAACCAGCAC 88268 Query 48658 TTTCACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACA 48717 || || |||||| | ||| ||| ||| ||||||| | | |||||||| || Sbjct 88269 TTGCAAATGGTGAGCTGCGTTGTATTGGTTCAACAACCTTTACCGAATATCGTCAAGTGT 88328 Query 48718 TTGAAAAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTGATGTAGTTGAACCTAGTA 48777 ||||||||||| |||||| || || || ||| ||||||||||| ||||| ||| Sbjct 88329 TTGAAAAAGATCATGCATTGTCACGTCGTTTCCAAAAAATTGATGTGAAAGAACCAAGTG 88388 Query 48778 TTAACGAAACACGTGAAATTATTAATGGTCTGAAAGGTACTTATGAAAAATATCACAACG 48837 || | || | || ||| | ||||| ||| ||||||| ||| |||||| | Sbjct 88389 TTGATGACAGTATCGACATTTTGCGAGGTCTCAAACCGCGTTATGAAGAATTTCACAATG 88448 Query 48838 T 48838 | Sbjct 88449 T 88449 >seq249645 Length=476466 Score = 93.3 bits (102), Expect = 9e-14 Identities = 256/390 (66%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 130850 GGTGTTGGCACACATACTATCAATGGTAAAGAACTTGTTATTGACATGTATGAACTGAAA 130909 |||| |||||| |||| ||||||||| |||||| | | || | | ||||||| Sbjct 268698 GGTGCTGGCACGCATAATATCAATGGCAAAGAAATCACGGTCGATTTACGCGCACTGAAA 268757 Query 130910 AAGAAACTGTGGTTGTGCTTAAATTCCATTAACGTATTGGAGGGTATACGATTTTATGTC 130969 ||| | ||| ||||| | | | | ||||| | || | || || || |||||| Sbjct 268758 AAGCAGATGTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTC 268817 Query 130970 TCATTCGCTGCATCCTTTGCATTTGGTGAAAATAAAATCATGGAAGGTAATGCCAAGATC 131029 || || ||| || ||||| |||| ||| ||| | ||||||||||||||||| ||| Sbjct 268818 TCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAATTGATGGAAGGTAATGCCAAAATC 268877 Query 131030 ATTAGACTAATTGCGAGGGATGAGTCTCTCCATTTAGCAGCAACTCAAATGATGCTTCGT 131089 |||| || || || | ||||| | || ||||| ||| || || ||||| Sbjct 268878 ATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAGCATATGCTAAAC 268937 Query 131090 TTGTTGAAAAA------AGAAGATCCAGACTTTGTTAAAATTTCTGAAGAATGCTATGAT 131143 | || || || ||||| || | || | ||| | | ||| || | ||| Sbjct 268938 CTCATGCGCAACGGTCGTGACGATCCTGAGATGGTCGAGATTGCCGCAGAGTGTTTCGAT 268997 Query 131144 G-AAGTCCAGAGTATGTTCCTGGATGCTATTAAGCAAGAAGAAGACTGGGCTGATTATCT 131202 | |||| || || |||| | ||| | |||||||| |||| ||||| | ||||| Sbjct 268998 GAAAGTATTGA-AATCTTCCGCAAAGCTGCTGAGCAAGAAAAAGAATGGGCAGGCTATCT 269056 Query 131203 ATTTAAAGATGGTTCTATTATCGGTCTTAA 131232 || |||||||| || || || ||||| || Sbjct 269057 GTTCAAAGATGGCTCGATGATTGGTCTAAA 269086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102669245464736