Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019526.1
Length=345809
Score E
Sequences producing significant alignments: (Bits) Value
seq56932 134 3e-26
seq249645 93.3 9e-14
>seq56932
Length=160465
Score = 134 bits (148), Expect = 3e-26
Identities = 248/361 (69%), Gaps = 6/361 (2%)
Strand=Plus/Plus
Query 48481 CTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTA 48540
|| ||| |||||||| ||||| |||||||| || ||| |||||||| || | ||
Sbjct 88092 CTTTAATCGCTGGTACTAAATATCGTGGTGATTTTGAAAAACGTATGAAATCGCTGCTTG 88151
Query 48541 AAGAACTTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGG 48600
| | |||||| ||| | ||||| || |||||||||||||| | ||||| || || |
Sbjct 88152 ATGCACTTAAGAAAAAACCAAATGCCATCTTGTTCATTGATGAGATCCATATGATTATTG 88211
Query 48601 GTGCTGG-TGGT--AGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCAC 48657
| || || | || | |||| | ||||||| || ||| | || ||||| ||||
Sbjct 88212 GCGCAGGGTCGTCAATGAGCAGTAA---TATGGATGTGTCAAATCTGATCAAACCAGCAC 88268
Query 48658 TTTCACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACA 48717
|| || |||||| | ||| ||| ||| ||||||| | | |||||||| ||
Sbjct 88269 TTGCAAATGGTGAGCTGCGTTGTATTGGTTCAACAACCTTTACCGAATATCGTCAAGTGT 88328
Query 48718 TTGAAAAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTGATGTAGTTGAACCTAGTA 48777
||||||||||| |||||| || || || ||| ||||||||||| ||||| |||
Sbjct 88329 TTGAAAAAGATCATGCATTGTCACGTCGTTTCCAAAAAATTGATGTGAAAGAACCAAGTG 88388
Query 48778 TTAACGAAACACGTGAAATTATTAATGGTCTGAAAGGTACTTATGAAAAATATCACAACG 48837
|| | || | || ||| | ||||| ||| ||||||| ||| |||||| |
Sbjct 88389 TTGATGACAGTATCGACATTTTGCGAGGTCTCAAACCGCGTTATGAAGAATTTCACAATG 88448
Query 48838 T 48838
|
Sbjct 88449 T 88449
>seq249645
Length=476466
Score = 93.3 bits (102), Expect = 9e-14
Identities = 256/390 (66%), Gaps = 8/390 (2%)
Strand=Plus/Plus
Query 130850 GGTGTTGGCACACATACTATCAATGGTAAAGAACTTGTTATTGACATGTATGAACTGAAA 130909
|||| |||||| |||| ||||||||| |||||| | | || | | |||||||
Sbjct 268698 GGTGCTGGCACGCATAATATCAATGGCAAAGAAATCACGGTCGATTTACGCGCACTGAAA 268757
Query 130910 AAGAAACTGTGGTTGTGCTTAAATTCCATTAACGTATTGGAGGGTATACGATTTTATGTC 130969
||| | ||| ||||| | | | | ||||| | || | || || || ||||||
Sbjct 268758 AAGCAGATGTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTC 268817
Query 130970 TCATTCGCTGCATCCTTTGCATTTGGTGAAAATAAAATCATGGAAGGTAATGCCAAGATC 131029
|| || ||| || ||||| |||| ||| ||| | ||||||||||||||||| |||
Sbjct 268818 TCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAATTGATGGAAGGTAATGCCAAAATC 268877
Query 131030 ATTAGACTAATTGCGAGGGATGAGTCTCTCCATTTAGCAGCAACTCAAATGATGCTTCGT 131089
|||| || || || | ||||| | || ||||| ||| || || |||||
Sbjct 268878 ATTAAGCTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAGCATATGCTAAAC 268937
Query 131090 TTGTTGAAAAA------AGAAGATCCAGACTTTGTTAAAATTTCTGAAGAATGCTATGAT 131143
| || || || ||||| || | || | ||| | | ||| || | |||
Sbjct 268938 CTCATGCGCAACGGTCGTGACGATCCTGAGATGGTCGAGATTGCCGCAGAGTGTTTCGAT 268997
Query 131144 G-AAGTCCAGAGTATGTTCCTGGATGCTATTAAGCAAGAAGAAGACTGGGCTGATTATCT 131202
| |||| || || |||| | ||| | |||||||| |||| ||||| | |||||
Sbjct 268998 GAAAGTATTGA-AATCTTCCGCAAAGCTGCTGAGCAAGAAAAAGAATGGGCAGGCTATCT 269056
Query 131203 ATTTAAAGATGGTTCTATTATCGGTCTTAA 131232
|| |||||||| || || || ||||| ||
Sbjct 269057 GTTCAAAGATGGCTCGATGATTGGTCTAAA 269086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102669245464736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |