Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq26767 127 3e-24 seq249645 102 1e-16 seq249537 84.2 3e-11 >seq26767 Length=1149 Score = 127 bits (140), Expect = 3e-24 Identities = 516/805 (64%), Gaps = 21/805 (3%) Strand=Plus/Plus Query 119923 TTTCATCAGTACCCTTGTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACA 119982 |||| ||| | ||| | ||||| || || || | | | |||| || |||||||| | Sbjct 80 TTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATA 139 Query 119983 TAGGGTAATTCAGAGTAGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCG 120042 | || ||| | ||| || | || || | | | ||||| |||||| || || | Sbjct 140 TTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAG 199 Query 120043 CAGTATGGAAGTGCTTGTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAA 120102 || | || || || || || || || || || ||||| ||||||||| || | || Sbjct 200 CACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAA 259 Query 120103 TTGGTGAACCCTCCGCACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGA 120162 | || ||| | |||||||| ||||||||||||||||| || || |||||| | Sbjct 260 TAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAA 319 Query 120163 TATAACTAATAATAGATGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAA 120222 ||| | | |||||| || ||| |||||||||| | ||| ||| | |||||| Sbjct 320 CATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAA 379 Query 120223 TTTTCACACACGAACTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTG 120282 || ||||| || |||||||| || || || || | | ||| || ||| || || | Sbjct 380 TTAAAACACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCG 439 Query 120283 GGATTGAAATCTTAAATAGAGAAGCCGCATTATAATAA--TTGATTACGTGTTGAAGTCG 120340 | | ||||| || || ||| ||||||||| || ||| |||| || || Sbjct 440 GTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACGCTGA--ACGT----AATTCA 493 Query 120341 GTTTACTTTTTCACTCTGATGTAG------AGC-CATAGCAATT--CCCATATAAAGGAA 120391 | || | ||| || ||| ||| | || ||| |||||||| || Sbjct 494 TTCTAATATTTTTGGGATATTTAGAAAATAAGCACGCAGATATTAGAACATATAAA--AA 551 Query 120392 TTGGGGGGTTTCGTACATCTCCTTAGTTACTCTATTTCGTACCAAGTACTTTTCTTTTAA 120451 ||||| | |||| || || | | ||| | ||| ||| ||| || ||| ||| ||| Sbjct 552 TTGGGCGCTTTCATATATTTTCCCGCTTATGCGGTTTTGTATCAAATATTTTCCTTCTAA 611 Query 120452 CTGCATTGCACCAGCATATGTAAAATTCATATCTCGGGAATGGTCAATATGAAGATTGAG 120511 || || | | ||||||| ||| |||||||| || |||| | |||| | ||| | Sbjct 612 TTGTTTTACCGCTGCATATGAAAAGTTCATATCGCGCCAATGATTAATAAAAGCATTCA- 670 Query 120512 GTATTCAATA-TCCGCTGGTGAATATTGTTTCAGAAGGTCTTTATCATAAAATCCAAGAC 120570 | | |||| || | || || | ||| | | | ||||||||| || | | Sbjct 671 TTTCTAAATATTCTTCATAAGAGTAATATTTTAATAAATTTTTATCATATTTACCTAAAA 730 Query 120571 CAACCAGTTTAGAAATATGGTCATACAATGAAATTGGATCGAATTGTCCATATACATCCT 120630 ||||| ||| | ||| |||||||| || || || ||||| ||||| | | | Sbjct 731 GAACCATTTTTTTTACATGTTCATACAAACAAGGAGGCTCAAATTGACCATAAGCTTTTT 790 Query 120631 TACGAAGGGTGTACATAGTTAAACGACCCGCTACATATTGATAATCCGGTTCTTCAACGG 120690 | | ||| | | |||| ||| | | || | |||||||||||| ||| || | Sbjct 791 TTCTAAGATGGAATATAGCTAATCTTGCTGCCATATATTGATAATCTGGTGTATCTGGTG 850 Query 120691 AAATCATATTGGTTGCGGCTTTAAT 120715 |||| | || || ||| |||||||| Sbjct 851 AAATTAGATCGGCTGCAGCTTTAAT 875 >seq249645 Length=476466 Score = 102 bits (112), Expect = 1e-16 Identities = 265/404 (66%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 119913 CGGATCCGGGTTTCATCAGTACCCTTGTTATTCTTCAATACAAGCAGTTTCTCAACCTCC 119972 |||| ||| | || ||| ||| |||||| || | ||| || | | |||||| || Sbjct 264929 CGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGTAATGACTCAACTTCT 264870 Query 119973 AAATGCCACATAGGGTAATTCAGAGTAGCAGAGCCGCCACGTAGAGCACCTTGCGAACAG 120032 |||||||| | ||||| || || |||| |||||||||| ||||||| || ||| Sbjct 264869 AAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACGCCACCTTGTGAGCAG 264810 Query 120033 CTCTTAACCGCAGTATGGAAGTGCTTGTAGAATGGGATTACGCCGGTATGGGTTGCTTCG 120092 | ||||| || || ||||| || || || || || ||| ||||| |||||| Sbjct 264809 CATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCAGTATGCTGTGCTTCA 264750 Query 120093 CCGTTGCGAATTGGTGAACCCTCCGCACGAATAGCACCAGCATTAATACCAATACCAGCA 120152 ||| || || || ||| ||||| ||| ||| || || || || ||||||||| Sbjct 264749 CCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCTGCGTTGATGCCGATACCAGCA 264690 Query 120153 CGTTGACTGATATAACTAATAATAGATGCAGACGTATCGTTAATAGATTTCAGAGAATCG 120212 || || | ||| | | || | || || |||| ||||| | | ||| Sbjct 264689 CGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCGTTGATAGAGTCTAAGCTATCA 264630 Query 120213 CCGGATTCAATTTTCACACACGAACTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAA 120272 || |||| ||| || ||||| ||||| || |||| ||| || || |||| || Sbjct 264629 CCACATTCGATTAAGACGCACGAGCTAAACTGACGCGATGGCGTACGCACACCTGACATG 264570 Query 120273 ATAGGGGTTGGGATTGAAATCTTAAATAGAGAAGCCGCATTATA 120316 || || ||||| | ||| || || ||| || | ||||| ||| Sbjct 264569 ATTGGCGTTGGTAGTGAGATTTTGAATTCTGAGGTCGCATCATA 264526 >seq249537 Length=1253 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 198941 TTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAGTCCAGT 199000 |||||||||| ||| ||||||| ||||||||||||| |||||| ||||||| | ||||| Sbjct 3 TTAGCTCAGT-GGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAATCCAGC 61 Query 199001 AGGGGCCA 199008 |||||||| Sbjct 62 AGGGGCCA 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738972898828640