Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq125822 143 8e-30 >seq125822 Length=25115 Score = 143 bits (158), Expect = 8e-30 Identities = 384/579 (66%), Gaps = 20/579 (3%) Strand=Plus/Plus Query 45437 ATGAAACAATATC-TAGACTTGCTGCAA-GACATCTTAGAAAACGGCGTGGAGAAAGAAG 45494 |||||||| || | | |||| ||| | || |||||| |||||||| | ||||||| Sbjct 7706 ATGAAACAGTACCATCAACTT--TGCCACGAAATCTTAACGAACGGCGTCAAAAAAGAAG 7763 Query 45495 ATCGGACGGGAACAGGCAC----ATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTG 45550 | || |||||||| || || | | || || || | |||| |||| || ||| Sbjct 7764 ACCGCACGGGAACCGGAACGACCAGTATC----TTTGGTCATCAGATGCGGTTCCCTTTG 7819 Query 45551 CAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAA 45610 ||||| ||||| ||| | |||||||||||||| || ||||| ||||| || |||| Sbjct 7820 CAGGATGGATTTCCGATGGTGACGACGAAAAAATTACATATGAAGTCGATTATCCATGAG 7879 Query 45611 CTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACG 45670 || | |||||| | || || || || || ||| | || || || || || | Sbjct 7880 TTGATTTGGTTTATCTCGGGTGACACCAACATTTCATATCTTCAAGAAAACGGCGTCCGG 7939 Query 45671 ATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGG 45730 |||||| |||||||||| || ||| |||| ||||||| || | || ||||| || ||| Sbjct 7940 ATTTGGAACGAGTGGGCGGACGAAGACGGGAATCTCGGACCGGTTTATGGCGCCCAGTGG 7999 Query 45731 CGGTCGT---GGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAG 45787 || || | |||| | || || ||||| || || | || | ||| | || Sbjct 8000 CGTTCTTTCCCGAAA---CCGGATGGATCGACGGTTGATCAGTTGGCCGATGTCATCGAG 8056 Query 45788 GAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAA-CGTGGCAAA 45846 |||| ||| || ||| | || || || || |||| || || ||||| | || || Sbjct 8057 CAAATTAAGACGAATCCGGATTCTCGTCGTCTGATTGTCAGTGCTTGGAATCCCGGTCAA 8116 Query 45847 GTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGG 45906 || | || ||| ||||| || || || ||||| ||||| |||||||| || Sbjct 8117 -TTAGAAGAGATGGCCTTGCCGCCCTGCCACCTGCTGTTTCAATTTTATGTCGCGAACGG 8175 Query 45907 CCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAA 45966 |||||| ||| | | || || |||| |||| ||| |||| | || ||||| Sbjct 8176 AAAGTTGTCGTGCCAGCTTTACCAACGGTCTGCCGATGTCTTTTTAGGTGTTCCATTTAA 8235 Query 45967 CATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005 || ||| || || || |||| || ||| |||| || Sbjct 8236 TATTGCTTCTTACGCTTTGCTGACGCACATGATTGCTCA 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157249805528792