Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019544.1
Length=49335
Score E
Sequences producing significant alignments: (Bits) Value
seq125822 143 8e-30
>seq125822
Length=25115
Score = 143 bits (158), Expect = 8e-30
Identities = 384/579 (66%), Gaps = 20/579 (3%)
Strand=Plus/Plus
Query 45437 ATGAAACAATATC-TAGACTTGCTGCAA-GACATCTTAGAAAACGGCGTGGAGAAAGAAG 45494
|||||||| || | | |||| ||| | || |||||| |||||||| | |||||||
Sbjct 7706 ATGAAACAGTACCATCAACTT--TGCCACGAAATCTTAACGAACGGCGTCAAAAAAGAAG 7763
Query 45495 ATCGGACGGGAACAGGCAC----ATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTG 45550
| || |||||||| || || | | || || || | |||| |||| || |||
Sbjct 7764 ACCGCACGGGAACCGGAACGACCAGTATC----TTTGGTCATCAGATGCGGTTCCCTTTG 7819
Query 45551 CAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAA 45610
||||| ||||| ||| | |||||||||||||| || ||||| ||||| || ||||
Sbjct 7820 CAGGATGGATTTCCGATGGTGACGACGAAAAAATTACATATGAAGTCGATTATCCATGAG 7879
Query 45611 CTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACG 45670
|| | |||||| | || || || || || ||| | || || || || || |
Sbjct 7880 TTGATTTGGTTTATCTCGGGTGACACCAACATTTCATATCTTCAAGAAAACGGCGTCCGG 7939
Query 45671 ATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGG 45730
|||||| |||||||||| || ||| |||| ||||||| || | || ||||| || |||
Sbjct 7940 ATTTGGAACGAGTGGGCGGACGAAGACGGGAATCTCGGACCGGTTTATGGCGCCCAGTGG 7999
Query 45731 CGGTCGT---GGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAG 45787
|| || | |||| | || || ||||| || || | || | ||| | ||
Sbjct 8000 CGTTCTTTCCCGAAA---CCGGATGGATCGACGGTTGATCAGTTGGCCGATGTCATCGAG 8056
Query 45788 GAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAA-CGTGGCAAA 45846
|||| ||| || ||| | || || || || |||| || || ||||| | || ||
Sbjct 8057 CAAATTAAGACGAATCCGGATTCTCGTCGTCTGATTGTCAGTGCTTGGAATCCCGGTCAA 8116
Query 45847 GTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGG 45906
|| | || ||| ||||| || || || ||||| ||||| |||||||| ||
Sbjct 8117 -TTAGAAGAGATGGCCTTGCCGCCCTGCCACCTGCTGTTTCAATTTTATGTCGCGAACGG 8175
Query 45907 CCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAA 45966
|||||| ||| | | || || |||| |||| ||| |||| | || |||||
Sbjct 8176 AAAGTTGTCGTGCCAGCTTTACCAACGGTCTGCCGATGTCTTTTTAGGTGTTCCATTTAA 8235
Query 45967 CATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005
|| ||| || || || |||| || ||| |||| ||
Sbjct 8236 TATTGCTTCTTACGCTTTGCTGACGCACATGATTGCTCA 8274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157249805528792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |