Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019726.1 Length=141836 Score E Sequences producing significant alignments: (Bits) Value seq158858 141 8e-29 seq111679 113 4e-20 >seq158858 Length=235449 Score = 141 bits (156), Expect = 8e-29 Identities = 409/625 (65%), Gaps = 14/625 (2%) Strand=Plus/Minus Query 93666 ATCTGTTTTAGGATTTTTATAGA-TAA--GTTTTTCTTCATTTTTAATCTTAGCATATGT 93722 ||||||||| |||| || | | ||| ||| |||| ||||| | ||||||||| Sbjct 214896 ATCTGTTTTTGGATCCTTGAACAATAAACGTTCTTCTCCATTTACTAC---AGCATATGT 214840 Query 93723 TGCTTTGATTGCAAACCCGTGAGTATCACGAGTATTAAATTGGTAAGAGAAACTACCTAC 93782 ||||| || |||||||| ||| ||| ||||| | | ||||| ||| || || || Sbjct 214839 AGCTTTCATAGCAAACCCTAGAGAATCGCGAGTCTGATATTGGAAAGTATAAGATCCCAC 214780 Query 93783 ACCTAATACAACATTAATACTTGCAAAACCTTTTTCTTTTAATCCTTCACAA--ATTTGT 93840 || || ||||| || | ||||| |||||||||| ||| |||| ||| || | Sbjct 214779 GCCGAAAACAACGTTTGTTGAAGCAAAGCCTTTTTCTTCTAA--CTTCTCAACAATAGCT 214722 Query 93841 TGAGCACGTTCATAGTTAATAGAGTCTCCATAAATTAATCCTACGTGTTCATCTAATACT 93900 | ||||| ||| |||||||||| ||||| ||| || | || |||||||| | Sbjct 214721 TTTGCACGCTCAAGAGTAATAGAGTCACCATAGATTGCACCAATATGAGTATCTAATAGT 214662 Query 93901 TTGTACCCTTTTTCAGTTTCAGTACCTCCAAATGTATCCCAAAGTACTTCTACTGCACCT 93960 || || || || ||||| || || ||||| ||||||| | | || | | ||| Sbjct 214661 TTATAACCCTTCTCAGTAATTGTTCCACCAAAGATATCCCATAAAGCCTCAATTAGTCCT 214602 Query 93961 TTACGTTCATAATCAGTATCTGCATCAGGGTCTCCGCAAATAATTTTAACANNNNNNNNG 94020 ||||||||| || || | ||| || |||| || || ||| |||| Sbjct 214601 TTACGTTCAAGTTCTGTTTTTGCTTCTGGGTTACCAGTAAGAATAAGAACAGGGTCTCCA 214542 Query 94021 CTATCAGGTCTGATTACTACTTTACCTTCACGTCCCATAATAATATCCTTTAATCTAGGT 94080 |||||||| | || || | ||| |||||| |||| || | ||| | | ||| Sbjct 214541 CTATCAGGACGAATAACCATACGACCATCACGTTCCATGATTTCCTTCTTAAGACGAGG- 214483 Query 94081 AAAGTTTTAGTCATATTAC--CCCAAAAGTCCCAAGTATCAGATACAATAGAGAAAATTC 94138 ||| || || || ||| |||| || || | || || || || | | ||| | | Sbjct 214482 -AAGAATTTCTCCTACTACTGCCCAGAAATCATACGTGTCTGAAACTACACTGAAGAAGC 214424 Query 94139 CTGTTGGATATATTTCTGTTAACATACGTTTATATGTTTCATACTCATCCATGGTTTCAT 94198 || | ||||||| || |||| | ||| || || |||| | ||||| | | || Sbjct 214423 CTTTAGGATATACCTCAGTTATAAGACGCTTGTACATTTCGAATTCATCACGGCTATCTG 214364 Query 94199 AATTACCATTTGCACACATTACTGAGTGTTCAGTAGCAGGGATAGAAGCAACAACCATTT 94258 || ||||| |||| ||||| ||||||||||| || || || | | || | || Sbjct 214363 CATCTGTGTTTGCTGACATAACTGAATGTTCAGTAGCTGGTATTGATGTTCCTACTAATT 214304 Query 94259 CCTTCTCTACGTCTGCATTGTAATA 94283 |||| || | || ||||||||||| Sbjct 214303 CCTTTTCAATGTTCGCATTGTAATA 214279 >seq111679 Length=1463 Score = 113 bits (124), Expect = 4e-20 Identities = 212/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 66298 AAATTAACAGGATTTATCGATGCAAATGGTAAGTTTCATGAAACTCAATTCTATAAAGCA 66357 |||||||| |||||||| || || ||||| | ||| || ||||| || || |||| Sbjct 1454 AAATTAACTGGATTTATTGACGCTTCTGGTACATATCAGGAGACTCAGTTTTACCAAGCT 1395 Query 66358 TTTACAAAAGGTGGGTTATTCTTCTTAGATGAAATGGATGCATCTATTCCTGAAGTACTA 66417 ||||| || || || |||| |||||||||||||||||||| || | || || | || Sbjct 1394 TTTACTAAGGGGGGTATATTTTTCTTAGATGAAATGGATGCTTCGGTACCAGAGGCTTTA 1335 Query 66418 TTAATTCTTAATTCAGCTATTGCAAATAAATACTTTGACTTCCCTATTGGACGTGTAACA 66477 | || || ||| | || ||||| ||| |||||| | || |||| ||| | | Sbjct 1334 GTTATACTGAATGCTGCAATTGCTAATCGGTACTTTAATTTTCCTAATGGTAAAGCTCAA 1275 Query 66478 GCTCATGAAGATTTCAGAGTTGTGTCAGCAGGTAATACTATGGGAACAGGAGCAGACCAC 66537 || ||| ||||| | || ||| | || | |||||| | || | ||||| ||||| Sbjct 1274 GCACATCCTGATTTTACTGTAGTGGCTGCTGCTAATACAACAGGTAGGGGAGCTGACCAG 1215 Query 66538 ATTTATGTAGGTAGACAACAATTAGACGGAGCTACATTAGACCGCTTTGCTCAAGTTGAA 66597 ||| ||| | || | |||| | |||||||| ||| | |||| | | || Sbjct 1214 CAGTATACAGGACGTCATATACTAGATGCTGCTACATTGGACAGGTTTGTACTTTTAGAC 1155 Query 66598 TTTGACTATGAT 66609 ||| |||||||| Sbjct 1154 TTTAACTATGAT 1143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452231525540480