Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq26767 141 1e-28 seq244327 125 8e-24 seq249537 93.3 5e-14 seq190673 86.0 7e-12 >seq26767 Length=1149 Score = 141 bits (156), Expect = 1e-28 Identities = 298/439 (68%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 146563 TTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTC 146622 |||||||| || ||||||| | ||| || | | ||||| |||| || |||| || Sbjct 43 TTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTT 102 Query 146623 TTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCA 146682 || | || | | |||| | ||||| |||||| || |||||| | | ||| || || Sbjct 103 TTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCT 162 Query 146683 CCGCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGT-TTTCCAGAA 146741 || || | || || ||||||||||| ||||| |||| | || | | | ||| | || Sbjct 163 CCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCA-CTTTGAAAATGTTTATAAAA 221 Query 146742 TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATA 146801 |||||| || |||||| |||| ||| | ||| | |||| | |||||| Sbjct 222 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 281 Query 146802 CATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTT 146861 |||||||||||| |||||| || || |||| | |||||| | || | | | Sbjct 282 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 341 Query 146862 TACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAACTG 146921 ||||||||| || ||| |||| ||| |||||| | ||| || || || || || Sbjct 342 AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTG 401 Query 146922 GCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAA-TCTGACGTTTAG 146980 ||||| ||||| | || || | ||||||||| || || | ||||| | ||| || | Sbjct 402 TCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTT-G 460 Query 146981 ATACGGCATTATAGAAACG 146999 | | ||||||||| ||||| Sbjct 461 AAATGGCATTATAAAAACG 479 >seq244327 Length=1302 Score = 125 bits (138), Expect = 8e-24 Identities = 260/384 (68%), Gaps = 5/384 (1%) Strand=Plus/Plus Query 143236 TTAATTAATACATCGTCATATAATTTACTAATAGATTCAGCTCGAGCCATGATAGCTTCA 143295 || |||||| |||||||| || | | |||| || ||||||| | | ||| || | Sbjct 738 TTTATTAAT---TCGTCATAGTATATGCAAATATTTTTAGCTCGATCGTTAATATGTTTA 794 Query 143296 TCTAGAATAATCTCATCAAAGATTTTACCGGGATCAGAGAACAGATTTCGCATGATATGA 143355 | |||||| |||||||| ||| | ||| | | | ||||| || |||||| Sbjct 795 TTGGAAATAATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGA 854 Query 143356 GTATAAGAACGACTATGGATAGTTTCAGAGAAAGTCCATGTAGCAACCCATGTATCTAAT 143415 ||||||||||| || |||||||| || |||| |||||| ||| ||| || |||||| Sbjct 855 GTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAAT 914 Query 143416 GCTGGGTCAGAAATAAGTGGCATCAATACCGACG-AAGGTGCACGACCTTGGATAGTGTC 143474 | || |||||||| ||| | || | | | | ||| | ||||| |||| ||| Sbjct 915 TCCGGAATAGAAATAATTGGTA-GAAAAGCAATGTTAGGACTTCTTCCTTGAATAGAGTC 973 Query 143475 TAATAATGACTGATATTTCAAATTATCAACAAAAATATTTTGTTGGTGAGGAAGAAGGCG 143534 |||||||| |||||||| |||||| || |||||||| || || || | | | Sbjct 974 TAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGGTAAATT 1033 Query 143535 GTCGAATTGGCCTTTATCTGTCATTAGATTAACTTCTTCAGGTCGCCaaaaaaaTCCAAG 143594 | || | | ||||| |||| | ||||||||||| ||||||||| || Sbjct 1034 TTGAAAATCTATTCTATCTCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAAAGAGAG 1093 Query 143595 TTGCTTTTCTGTCAATTCTTCAAA 143618 ||| ||||| | |||| |||||| Sbjct 1094 TTGTTTTTCAATTAATTTTTCAAA 1117 >seq249537 Length=1253 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 74897 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 74956 || ||| |||||| | ||||||||||||||| |||||| ||||||||||||| |||||| Sbjct 77 TATTTTAATGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 18 Query 74957 TAACCATCTGAGCTAAAG 74974 | |||| ||||||||||| Sbjct 17 TTACCA-CTGAGCTAAAG 1 >seq190673 Length=317 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 145632 AACTACTTGGTTAAAGCTTCCTTCTTTAGATTCTTTAACACTTACAGGACCACGTGGGGG 145691 ||||||||| || |||| ||||| ||| |||||| ||| | | ||| | ||| || Sbjct 1 AACTACTTGACGTAATATTCCATCTTTTGATACTTTAATACTAATAAAACCTCTTGGTGG 60 Query 145692 CTCAATACCATTGGTGCTGTTTGATACTTGACTGCTTGATTCACACGGCATAAGTGCTGA 145751 ||||| ||||| || || |||| |||| | || ||| | ||||||||||| || Sbjct 61 TTCAATTCCATTAGTTGCATTAGATATTTGAGAGGATGTTTCTGAAGGCATAAGTGCAGA 120 Query 145752 TAATGTTGAGTTTCT 145766 ||||||||||||||| Sbjct 121 TAATGTTGAGTTTCT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538256807906720