Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019909.1
Length=168809
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 141 1e-28
seq244327 125 8e-24
seq249537 93.3 5e-14
seq190673 86.0 7e-12
>seq26767
Length=1149
Score = 141 bits (156), Expect = 1e-28
Identities = 298/439 (68%), Gaps = 4/439 (1%)
Strand=Plus/Plus
Query 146563 TTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTC 146622
|||||||| || ||||||| | ||| || | | ||||| |||| || |||| ||
Sbjct 43 TTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTT 102
Query 146623 TTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCA 146682
|| | || | | |||| | ||||| |||||| || |||||| | | ||| || ||
Sbjct 103 TTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCT 162
Query 146683 CCGCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGT-TTTCCAGAA 146741
|| || | || || ||||||||||| ||||| |||| | || | | | ||| | ||
Sbjct 163 CCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCA-CTTTGAAAATGTTTATAAAA 221
Query 146742 TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATA 146801
|||||| || |||||| |||| ||| | ||| | |||| | ||||||
Sbjct 222 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 281
Query 146802 CATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTT 146861
|||||||||||| |||||| || || |||| | |||||| | || | | |
Sbjct 282 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 341
Query 146862 TACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAACTG 146921
||||||||| || ||| |||| ||| |||||| | ||| || || || || ||
Sbjct 342 AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTG 401
Query 146922 GCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAA-TCTGACGTTTAG 146980
||||| ||||| | || || | ||||||||| || || | ||||| | ||| || |
Sbjct 402 TCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTT-G 460
Query 146981 ATACGGCATTATAGAAACG 146999
| | ||||||||| |||||
Sbjct 461 AAATGGCATTATAAAAACG 479
>seq244327
Length=1302
Score = 125 bits (138), Expect = 8e-24
Identities = 260/384 (68%), Gaps = 5/384 (1%)
Strand=Plus/Plus
Query 143236 TTAATTAATACATCGTCATATAATTTACTAATAGATTCAGCTCGAGCCATGATAGCTTCA 143295
|| |||||| |||||||| || | | |||| || ||||||| | | ||| || |
Sbjct 738 TTTATTAAT---TCGTCATAGTATATGCAAATATTTTTAGCTCGATCGTTAATATGTTTA 794
Query 143296 TCTAGAATAATCTCATCAAAGATTTTACCGGGATCAGAGAACAGATTTCGCATGATATGA 143355
| |||||| |||||||| ||| | ||| | | | ||||| || ||||||
Sbjct 795 TTGGAAATAATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGA 854
Query 143356 GTATAAGAACGACTATGGATAGTTTCAGAGAAAGTCCATGTAGCAACCCATGTATCTAAT 143415
||||||||||| || |||||||| || |||| |||||| ||| ||| || ||||||
Sbjct 855 GTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAAT 914
Query 143416 GCTGGGTCAGAAATAAGTGGCATCAATACCGACG-AAGGTGCACGACCTTGGATAGTGTC 143474
| || |||||||| ||| | || | | | | ||| | ||||| |||| |||
Sbjct 915 TCCGGAATAGAAATAATTGGTA-GAAAAGCAATGTTAGGACTTCTTCCTTGAATAGAGTC 973
Query 143475 TAATAATGACTGATATTTCAAATTATCAACAAAAATATTTTGTTGGTGAGGAAGAAGGCG 143534
|||||||| |||||||| |||||| || |||||||| || || || | | |
Sbjct 974 TAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGGTAAATT 1033
Query 143535 GTCGAATTGGCCTTTATCTGTCATTAGATTAACTTCTTCAGGTCGCCaaaaaaaTCCAAG 143594
| || | | ||||| |||| | ||||||||||| ||||||||| ||
Sbjct 1034 TTGAAAATCTATTCTATCTCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAAAGAGAG 1093
Query 143595 TTGCTTTTCTGTCAATTCTTCAAA 143618
||| ||||| | |||| ||||||
Sbjct 1094 TTGTTTTTCAATTAATTTTTCAAA 1117
>seq249537
Length=1253
Score = 93.3 bits (102), Expect = 5e-14
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 74897 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 74956
|| ||| |||||| | ||||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 77 TATTTTAATGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 18
Query 74957 TAACCATCTGAGCTAAAG 74974
| |||| |||||||||||
Sbjct 17 TTACCA-CTGAGCTAAAG 1
>seq190673
Length=317
Score = 86.0 bits (94), Expect = 7e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 145632 AACTACTTGGTTAAAGCTTCCTTCTTTAGATTCTTTAACACTTACAGGACCACGTGGGGG 145691
||||||||| || |||| ||||| ||| |||||| ||| | | ||| | ||| ||
Sbjct 1 AACTACTTGACGTAATATTCCATCTTTTGATACTTTAATACTAATAAAACCTCTTGGTGG 60
Query 145692 CTCAATACCATTGGTGCTGTTTGATACTTGACTGCTTGATTCACACGGCATAAGTGCTGA 145751
||||| ||||| || || |||| |||| | || ||| | ||||||||||| ||
Sbjct 61 TTCAATTCCATTAGTTGCATTAGATATTTGAGAGGATGTTTCTGAAGGCATAAGTGCAGA 120
Query 145752 TAATGTTGAGTTTCT 145766
|||||||||||||||
Sbjct 121 TAATGTTGAGTTTCT 135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 538256807906720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |