Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019914.1 Length=40071 Score E Sequences producing significant alignments: (Bits) Value seq244084 178 3e-40 seq292 116 9e-22 seq260187 86.0 2e-12 >seq244084 Length=450 Score = 178 bits (196), Expect = 3e-40 Identities = 254/356 (71%), Gaps = 4/356 (1%) Strand=Plus/Minus Query 21476 ATCGCTTTAGTTAATCCTAATGATGTTGCTGGACACTTAGCAGAAGGTTTAATCAACTCT 21535 ||||| ||||| || ||||| || || || || || |||||||| ||||| |||||||| Sbjct 448 ATCGCATTAGTAAACCCTAACGACGTAGCGGGTCATTTAGCAGATGGTTTCATCAACTCA 389 Query 21536 GACGGTTCTGAATTCGGTTTGAATTTACTTACTCGTTACGTAGGTGCAAAAGTTATTGAA 21595 | |||||| ||||||| || || ||| | || | || ||||||| |||| || ||| Sbjct 388 AATGGTTCTCAATTCGGCTTAAACTTATTAACGCCATATGTAGGTGTGCAAGTGATCGAA 329 Query 21596 TTCTCTGATGTTCCAGAAGGCGAAGTATGGTTCACAGTTGCAGAAAACTTAAACGTAGCT 21655 ||||| || || || ||||| || | | || |||||||||||||||||||| Sbjct 328 TTCTCAGACGTACCTCAAGGCAGCGTGTACATGACTACAGCAGAAAACTTAAACGTAGCG 269 Query 21656 TATGCAAATCCTAATGGTGATTTATCATTAGCATTCCCATTCAGTGTTGATCAAACAGGT 21715 |||||||||||| | || || | ||| ||| || ||||||||||| Sbjct 268 TATGCAAATCCTCAAGGCGAAATGGGCAGAGCGTTCAACTTTGCATCAGATCAAACAGGA 209 Query 21716 TTTGTTGGTGTGTTACACGATATGGATTCAAGCCGTCTAACAAGTGAAACAGTATTAATG 21775 ||||| || || || || || || | ||| ||| ||||| || |||||||| | Sbjct 208 TTTGTAGGCGTATTGCATGACATTCAAGCAAATCGTTTAACAGCAGATACAGTATT--CG 151 Query 21776 CAT--GCTATCTCAATGTTCCCAGAAAACATTGATGCAGTTGTTAAAGTGACTATT 21829 ||| || || ||||||||||| ||||| |||| ||||||||| ||| ||||| Sbjct 150 CATCAGCAATTTCAATGTTCCCTGAAAATGTTGACGCAGTTGTTTCAGTATCTATT 95 >seq292 Length=255 Score = 116 bits (128), Expect = 9e-22 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 21149 GTCGCTGAAGGTGACGTTATTCCGTTAACTAAAGTTGAACGTGAATTAGTAGACATCACA 21208 || ||||| || ||| | ||||| ||||||||||||||||| ||| | || |||||||| Sbjct 13 GTTGCTGAGGGCGACATCATTCCATTAACTAAAGTTGAACGCGAACTTGTGAACATCACA 72 Query 21209 GAATTGACATTCAAAAAATTCCGTAAAGCAACTACTGCAGAATCAATTCAAGCACACGGA 21268 || || |||| || ||||||||| |||| | ||||| | || || ||||||| Sbjct 73 GAGCTGCAATTCCGTAAGTTCCGTAAATCAACATCAGCAGAGGCTATACAGTCACACGGT 132 Query 21269 TTTAGTACAGCGGTTAATCGTACCGATGATGAAATGTTACGTTATGTTCAAAAACAATTC 21328 | | | ||| | || || || || | ||| | | || |||||||| || ||||| Sbjct 133 TATGATCTAGCAATCAACCGCACAGACGCTGAGCTTATCCGCTATGTTCAGAAGAAATTC 192 Query 21329 CGTACAGATTTCTTCAA 21345 |||||||| |||||||| Sbjct 193 CGTACAGACTTCTTCAA 209 >seq260187 Length=34880 Score = 86.0 bits (94), Expect = 2e-12 Identities = 212/316 (67%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 10803 ATGATTAACAGAGTCGTATTAGTAGGTCGTTTAACTAAAGATCCTGAATTTAGAAAAACT 10862 ||||||||| | ||||| ||||| ||||| |||||| || |||||| | | | || Sbjct 22172 ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCTGAAATGCGTTATACG 22231 Query 10863 CAAAGTGGGGTTGATGTTGCAACTTTTACACTAGCAGTTAACCGTACTTTCACGAATGCG 10922 || || ||| ||| || | || ||||| || | ||||| | || || | Sbjct 22232 CAGAGCGGGATTGCGGTAACGCGATTCACACTCGCTTGTGACCGTCCGTTTACA---GGA 22288 Query 10923 CAAG--GCGAA-CGTGAAGCAGATTTTATCAATATAGTCGTATTCAGAAAACAAGCACAC 10979 |||| | ||| || ||||| || || ||| || ||||| | | || |||||| | Sbjct 22289 CAAGATGGGAAGCGAGAAGCTGACTTCATCGATTGCGTCGTTTGGCGCAAGCAAGCAGAG 22348 Query 10980 AACGTTAACAACTATTTATCGAAAGGAAAACTAGCAGGTGTTGATGGTCGCATCCA-ATC 11038 |||||| | ||||| ||||| | || ||||||||||| |||||| | || || Sbjct 22349 AACGTTGCTCAGTATTTGAAAAAAGGGAGCCTTGCAGGTGTTGAGGGTCGCCTTCAGATT 22408 Query 11039 ACGCAGTTATGAAAATCAAGAAGGTCGTCGAATATTTGTTACTGAAGTAGTTGCAGATAG 11098 | | || ||||| || |||| |||| || | | | | ||||| || || ||||| Sbjct 22409 A-GTAGCTATGACGATAAAGATGGTCAACGTCGTTATCGTGCAGAAGTCGTCGCGGATAG 22467 Query 11099 TGTTCAATTTCTTGAA 11114 ||||| ||| || ||| Sbjct 22468 TGTTCGATTCCTAGAA 22483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127699078336088