Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_019914.1
Length=40071
Score E
Sequences producing significant alignments: (Bits) Value
seq244084 178 3e-40
seq292 116 9e-22
seq260187 86.0 2e-12
>seq244084
Length=450
Score = 178 bits (196), Expect = 3e-40
Identities = 254/356 (71%), Gaps = 4/356 (1%)
Strand=Plus/Minus
Query 21476 ATCGCTTTAGTTAATCCTAATGATGTTGCTGGACACTTAGCAGAAGGTTTAATCAACTCT 21535
||||| ||||| || ||||| || || || || || |||||||| ||||| ||||||||
Sbjct 448 ATCGCATTAGTAAACCCTAACGACGTAGCGGGTCATTTAGCAGATGGTTTCATCAACTCA 389
Query 21536 GACGGTTCTGAATTCGGTTTGAATTTACTTACTCGTTACGTAGGTGCAAAAGTTATTGAA 21595
| |||||| ||||||| || || ||| | || | || ||||||| |||| || |||
Sbjct 388 AATGGTTCTCAATTCGGCTTAAACTTATTAACGCCATATGTAGGTGTGCAAGTGATCGAA 329
Query 21596 TTCTCTGATGTTCCAGAAGGCGAAGTATGGTTCACAGTTGCAGAAAACTTAAACGTAGCT 21655
||||| || || || ||||| || | | || ||||||||||||||||||||
Sbjct 328 TTCTCAGACGTACCTCAAGGCAGCGTGTACATGACTACAGCAGAAAACTTAAACGTAGCG 269
Query 21656 TATGCAAATCCTAATGGTGATTTATCATTAGCATTCCCATTCAGTGTTGATCAAACAGGT 21715
|||||||||||| | || || | ||| ||| || |||||||||||
Sbjct 268 TATGCAAATCCTCAAGGCGAAATGGGCAGAGCGTTCAACTTTGCATCAGATCAAACAGGA 209
Query 21716 TTTGTTGGTGTGTTACACGATATGGATTCAAGCCGTCTAACAAGTGAAACAGTATTAATG 21775
||||| || || || || || || | ||| ||| ||||| || |||||||| |
Sbjct 208 TTTGTAGGCGTATTGCATGACATTCAAGCAAATCGTTTAACAGCAGATACAGTATT--CG 151
Query 21776 CAT--GCTATCTCAATGTTCCCAGAAAACATTGATGCAGTTGTTAAAGTGACTATT 21829
||| || || ||||||||||| ||||| |||| ||||||||| ||| |||||
Sbjct 150 CATCAGCAATTTCAATGTTCCCTGAAAATGTTGACGCAGTTGTTTCAGTATCTATT 95
>seq292
Length=255
Score = 116 bits (128), Expect = 9e-22
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 21149 GTCGCTGAAGGTGACGTTATTCCGTTAACTAAAGTTGAACGTGAATTAGTAGACATCACA 21208
|| ||||| || ||| | ||||| ||||||||||||||||| ||| | || ||||||||
Sbjct 13 GTTGCTGAGGGCGACATCATTCCATTAACTAAAGTTGAACGCGAACTTGTGAACATCACA 72
Query 21209 GAATTGACATTCAAAAAATTCCGTAAAGCAACTACTGCAGAATCAATTCAAGCACACGGA 21268
|| || |||| || ||||||||| |||| | ||||| | || || |||||||
Sbjct 73 GAGCTGCAATTCCGTAAGTTCCGTAAATCAACATCAGCAGAGGCTATACAGTCACACGGT 132
Query 21269 TTTAGTACAGCGGTTAATCGTACCGATGATGAAATGTTACGTTATGTTCAAAAACAATTC 21328
| | | ||| | || || || || | ||| | | || |||||||| || |||||
Sbjct 133 TATGATCTAGCAATCAACCGCACAGACGCTGAGCTTATCCGCTATGTTCAGAAGAAATTC 192
Query 21329 CGTACAGATTTCTTCAA 21345
|||||||| ||||||||
Sbjct 193 CGTACAGACTTCTTCAA 209
>seq260187
Length=34880
Score = 86.0 bits (94), Expect = 2e-12
Identities = 212/316 (67%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 10803 ATGATTAACAGAGTCGTATTAGTAGGTCGTTTAACTAAAGATCCTGAATTTAGAAAAACT 10862
||||||||| | ||||| ||||| ||||| |||||| || |||||| | | | ||
Sbjct 22172 ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCTGAAATGCGTTATACG 22231
Query 10863 CAAAGTGGGGTTGATGTTGCAACTTTTACACTAGCAGTTAACCGTACTTTCACGAATGCG 10922
|| || ||| ||| || | || ||||| || | ||||| | || || |
Sbjct 22232 CAGAGCGGGATTGCGGTAACGCGATTCACACTCGCTTGTGACCGTCCGTTTACA---GGA 22288
Query 10923 CAAG--GCGAA-CGTGAAGCAGATTTTATCAATATAGTCGTATTCAGAAAACAAGCACAC 10979
|||| | ||| || ||||| || || ||| || ||||| | | || |||||| |
Sbjct 22289 CAAGATGGGAAGCGAGAAGCTGACTTCATCGATTGCGTCGTTTGGCGCAAGCAAGCAGAG 22348
Query 10980 AACGTTAACAACTATTTATCGAAAGGAAAACTAGCAGGTGTTGATGGTCGCATCCA-ATC 11038
|||||| | ||||| ||||| | || ||||||||||| |||||| | || ||
Sbjct 22349 AACGTTGCTCAGTATTTGAAAAAAGGGAGCCTTGCAGGTGTTGAGGGTCGCCTTCAGATT 22408
Query 11039 ACGCAGTTATGAAAATCAAGAAGGTCGTCGAATATTTGTTACTGAAGTAGTTGCAGATAG 11098
| | || ||||| || |||| |||| || | | | | ||||| || || |||||
Sbjct 22409 A-GTAGCTATGACGATAAAGATGGTCAACGTCGTTATCGTGCAGAAGTCGTCGCGGATAG 22467
Query 11099 TGTTCAATTTCTTGAA 11114
||||| ||| || |||
Sbjct 22468 TGTTCGATTCCTAGAA 22483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127699078336088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |