Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq217941 86.0 1e-11 seq28607 86.0 1e-11 >seq217941 Length=10726 Score = 86.0 bits (94), Expect = 1e-11 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| | |||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 5767 GGATTGTAGTTCAATCGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 5709 Query 169788 CCCCGTCAGTCCTGCCATTTTTA-AATTGCGTCTTA 169822 |||||||||||| | | | | | |||||||| ||| Sbjct 5708 CCCCGTCAGTCCCGACCTAGTCATAATTGCGTTTTA 5673 >seq28607 Length=83266 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 29911 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 29853 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 29852 CCCCGTCAGTCC 29841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 775034436948800