Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq214945 100 2e-16 seq210337 91.5 1e-13 seq185166 91.5 1e-13 seq26661 91.5 1e-13 seq54724 86.0 5e-12 >seq214945 Length=15579 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || ||||| || | | || || ||||| || ||| ||| || Sbjct 5714 ATGCAAATCTTCGTAAAGACTCTTAAAGGCAAGACCATATCCCTCGAGGTCGAAAGCTCG 5655 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || || | | ||||| || ||| || ||||| ||||| || ||| ||| Sbjct 5654 GACACAGTAGAAAACGTCAAGGCCAAGATCCAAGAGAAAGAAGGAGTCCCTTCAGACCAA 5595 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| |||||||| || ||||| |||||||| | ||| |||| ||||| ||| Sbjct 5594 CAGAGACTGATCTTTGCCGGTAAACAGCTGGAAGATGGTCGTACTTTGGCTGATTACAAC 5535 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| || || |||| ||| |||| | || ||| ||||||| || Sbjct 5534 ATCCAAAAGGAGTCAGCTCTCCACTTGGTTCTCAGGTTAAGAGGAGGTAT 5485 >seq210337 Length=1863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || ||||||||||| || || || Sbjct 1268 ATGCAAATCTTTGTCAAGACTCTCACTGGGAAAACCATTACTCTTGAGGTTGAGAGCTCC 1209 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || ||||| || ||| |||||||| || | || ||||| Sbjct 1208 GATACGATCGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAG 1149 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||||||||| || || ||| | |||||| ||| | || ||||| ||| Sbjct 1148 CAGAGACTTATCTTTGCCGGTAAGCAACTTGAAGATGGACGTACTCTTGCGGATTACAAC 1089 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTA 28763 || |||||||| || ||||| ||| ||||| Sbjct 1088 ATCCAAAAAGAGTCCACTCTACACTTGGTA 1059 >seq185166 Length=13725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||||||| | || |||||||||||| | |||||||| || |||||| | ||| Sbjct 3658 GACAAAGAGGGAATACCACCTGATCAACAGAGATTGATCTTTGCTGGTAAACAACTAGAA 3717 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | || ||||| ||||| || ||||| || ||||| ||| |||| || Sbjct 3718 GATGGTCGAACATTAGCGGATTACAACATCCAGAAAGAGTCGACTCTTCACTTGGTCTTG 3777 Query 28767 AGATTACGAGGAGGGATAATAAT 28789 || | | || |||| ||| || Sbjct 3778 AGGCTTAGGGGTGGGACAATGAT 3800 >seq26661 Length=2801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| | || || || || || ||| ||| |||| ||| Sbjct 946 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGTTCT 1005 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | | ||| ||| ||| ||||| || || | || ||||| Sbjct 1006 GACACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1065 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || |||||||||||| || |||| ||||| ||| Sbjct 1066 CAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCCGTACCTTGGCGGATTACAAC 1125 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 || ||||| ||||| || || ||| |||| |||| Sbjct 1126 ATCCAAAAGGAATCAACGCTTCACTTGGTGCTAAG 1160 >seq54724 Length=7877 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || ||||||||||||||| ||| || ||| Sbjct 1875 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACCATTACCCTCGAGGTTGAGAGCTCA 1934 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | || || ||| |||||||| || | || || || Sbjct 1935 GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCAG 1994 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || || ||| | || || | |||| ||||||| || || Sbjct 1995 CAGAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 2054 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||| ||||| |||||||| ||| |||| || Sbjct 2055 ATTCAGAAAGAGTCTACTCTTCACTTGGTGTT 2086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424019324099412