Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq204058 104 2e-17 >seq204058 Length=43643 Score = 104 bits (114), Expect = 2e-17 Identities = 447/698 (64%), Gaps = 29/698 (4%) Strand=Plus/Plus Query 38720 TGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTCCGAGAACTTCCACTTGTAACTTCCTG 38779 ||||||||||| || ||||| | |||||| || ||||| | || || | || || Sbjct 23742 TGTGTTCCTGTATCGAGCCATGCAAATCCGCGACCGAGTAACTCAACACGCAAGGAATTG 23801 Query 38780 TCTTCTAGGTAGCTGCGATTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTT 38839 ||||| ||||||| || | ||| || || || |||||||| | | ||||| || Sbjct 23802 TCTTCAAGGTAGCATTTGTTTAGATCTGTAATTTCGAGTTCTCCTCTTGGAGAAGGTTTT 23861 Query 38840 ACTTCTAATGCACGTTGAATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAA 38899 | | ||| | || ||| |||||||| ||||| | || || | ||| || Sbjct 23862 AACGATTTAGCAAAATCAACAACTCGATTATCATAAAAATAAAGTCCAGTAATAGCGTAG 23921 Query 38900 TCTGATTTAGGATTTTCAGGTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAAT 38959 | |||| ||||||||| ||||| || |||||| | | ||||| ||||| Sbjct 23922 TTACTCTTAGCGACTTCAGGTTTTTCTTCGATTGAAATAACGTTCTGATTATCGTCAAAT 23981 Query 38960 TCAACCACACCGAATCGTTCAGGATCTTTCACCAAATACCCGAAAATACAAGCTCCGCC- 39018 ||||| || || || ||||| ||||| | || ||| || |||| | | ||| | Sbjct 23982 TCAACAACGCCAAAACGTTCTGGATCGTGAACATGATAACCAAAAACAGTTGATCCTTCT 24041 Query 39019 --CCAAACATCTACCATCTCACTGGCGTTAATCAGTAGTTTACCAAAGCTTTGTCCGAAG 39076 || | || | | | ||||| ||| | ||| | || || || Sbjct 24042 TTTGAAGAAGCTGCTTTTT--------TTAATAAGTCCGT----AAAACCATGACCATAG 24089 Query 39077 AATAGGTTGTCACCTAAAATAAGAGCAACAGAGTCTTCTCCGATAAAATCTTTACCTATG 39136 | | |||||| |||| | ||| || | ||||| | || ||||| |||| || || Sbjct 24090 TAAATGTTGTCTCCTAGTACAAGGGCTATTGAGTCATTACCAATAAATTCTTCTCCAATT 24149 Query 39137 ATGAAAGCTTCCGCAAGACC-TC--GTGGCTCGGATTGGATTGCGTAAGTGAGTTTTATC 39193 || || |||| |||||||| || ||| | ||| ||| | |||| | | || Sbjct 24150 ATAAATGCTTGAGCAAGACCATCAGGTGATT---TTTGAATTTCATAAGATAATGAAATT 24206 Query 39194 CCAAACATAGACCCATCTCCGAGAAGATACTCAAAGTCTTCCTG-ATCACCTGGTGTGGT 39252 || | | ||||| || | | | ||||| | | || ||| |||| || | Sbjct 24207 CCGAGTTCACTTCCATCACCTAATAATTGTTCAAA-ACGTGGTGTATCCTCTGGAGTTGA 24265 Query 39253 GATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAGTAGATCAT 39312 |||||||| || |||||||| | || ||||| || || | ||||| | ||||| Sbjct 24266 AATGATTAAGATTTCCTTAATACCTGCTAACATTAACGTAGACATCGGGTAAAAAATCAT 24325 Query 39313 GGGTTTGTCATACACAGGGAGCAATTGCTT---GCTCACACTGCGTGTTACCGGATGAAG 39369 ||||| ||||| || || ||||| || || | | | ||| ||||| |||| | Sbjct 24326 TGGTTTATCATATACTGGAAGCAACTGTTTTGAGAT-AGACT--TTGTTAGTGGATATAA 24382 Query 39370 GCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCA 39407 | |||||||| ||||| ||||||||||||||||||| Sbjct 24383 TCTAGTTCCACTACCTCCTGCCAAAATAATACCTTTCA 24420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471051649043360