Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_020079.1
Length=147737
Score E
Sequences producing significant alignments: (Bits) Value
seq204058 104 2e-17
>seq204058
Length=43643
Score = 104 bits (114), Expect = 2e-17
Identities = 447/698 (64%), Gaps = 29/698 (4%)
Strand=Plus/Plus
Query 38720 TGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTCCGAGAACTTCCACTTGTAACTTCCTG 38779
||||||||||| || ||||| | |||||| || ||||| | || || | || ||
Sbjct 23742 TGTGTTCCTGTATCGAGCCATGCAAATCCGCGACCGAGTAACTCAACACGCAAGGAATTG 23801
Query 38780 TCTTCTAGGTAGCTGCGATTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTT 38839
||||| ||||||| || | ||| || || || |||||||| | | ||||| ||
Sbjct 23802 TCTTCAAGGTAGCATTTGTTTAGATCTGTAATTTCGAGTTCTCCTCTTGGAGAAGGTTTT 23861
Query 38840 ACTTCTAATGCACGTTGAATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAA 38899
| | ||| | || ||| |||||||| ||||| | || || | ||| ||
Sbjct 23862 AACGATTTAGCAAAATCAACAACTCGATTATCATAAAAATAAAGTCCAGTAATAGCGTAG 23921
Query 38900 TCTGATTTAGGATTTTCAGGTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAAT 38959
| |||| ||||||||| ||||| || |||||| | | ||||| |||||
Sbjct 23922 TTACTCTTAGCGACTTCAGGTTTTTCTTCGATTGAAATAACGTTCTGATTATCGTCAAAT 23981
Query 38960 TCAACCACACCGAATCGTTCAGGATCTTTCACCAAATACCCGAAAATACAAGCTCCGCC- 39018
||||| || || || ||||| ||||| | || ||| || |||| | | ||| |
Sbjct 23982 TCAACAACGCCAAAACGTTCTGGATCGTGAACATGATAACCAAAAACAGTTGATCCTTCT 24041
Query 39019 --CCAAACATCTACCATCTCACTGGCGTTAATCAGTAGTTTACCAAAGCTTTGTCCGAAG 39076
|| | || | | | ||||| ||| | ||| | || || ||
Sbjct 24042 TTTGAAGAAGCTGCTTTTT--------TTAATAAGTCCGT----AAAACCATGACCATAG 24089
Query 39077 AATAGGTTGTCACCTAAAATAAGAGCAACAGAGTCTTCTCCGATAAAATCTTTACCTATG 39136
| | |||||| |||| | ||| || | ||||| | || ||||| |||| || ||
Sbjct 24090 TAAATGTTGTCTCCTAGTACAAGGGCTATTGAGTCATTACCAATAAATTCTTCTCCAATT 24149
Query 39137 ATGAAAGCTTCCGCAAGACC-TC--GTGGCTCGGATTGGATTGCGTAAGTGAGTTTTATC 39193
|| || |||| |||||||| || ||| | ||| ||| | |||| | | ||
Sbjct 24150 ATAAATGCTTGAGCAAGACCATCAGGTGATT---TTTGAATTTCATAAGATAATGAAATT 24206
Query 39194 CCAAACATAGACCCATCTCCGAGAAGATACTCAAAGTCTTCCTG-ATCACCTGGTGTGGT 39252
|| | | ||||| || | | | ||||| | | || ||| |||| || |
Sbjct 24207 CCGAGTTCACTTCCATCACCTAATAATTGTTCAAA-ACGTGGTGTATCCTCTGGAGTTGA 24265
Query 39253 GATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAGTAGATCAT 39312
|||||||| || |||||||| | || ||||| || || | ||||| | |||||
Sbjct 24266 AATGATTAAGATTTCCTTAATACCTGCTAACATTAACGTAGACATCGGGTAAAAAATCAT 24325
Query 39313 GGGTTTGTCATACACAGGGAGCAATTGCTT---GCTCACACTGCGTGTTACCGGATGAAG 39369
||||| ||||| || || ||||| || || | | | ||| ||||| |||| |
Sbjct 24326 TGGTTTATCATATACTGGAAGCAACTGTTTTGAGAT-AGACT--TTGTTAGTGGATATAA 24382
Query 39370 GCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCA 39407
| |||||||| ||||| |||||||||||||||||||
Sbjct 24383 TCTAGTTCCACTACCTCCTGCCAAAATAATACCTTTCA 24420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471051649043360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |