Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq26767 224 1e-53 seq249645 170 2e-37 seq244327 107 2e-18 seq76715 86.0 7e-12 >seq26767 Length=1149 Score = 224 bits (248), Expect = 1e-53 Identities = 324/457 (71%), Gaps = 0/457 (0%) Strand=Plus/Minus Query 40423 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 40482 ||||||||| || ||||| | |||| | ||| ||||||| ||||||||| | || || Sbjct 477 TTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGT 418 Query 40483 ACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGG 40542 | |||||||| || || || | ||||| ||||||||| | |||| ||| | Sbjct 417 TAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGA 358 Query 40543 TTCTCTTAACGCTGTAACCTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGG 40602 |||| |||||||| || | | || || || ||| |||| ||||| || || ||||| Sbjct 357 TTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGG 298 Query 40603 GGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCA 40662 |||| || ||| | ||||| ||| | ||| | || | ||| ||||| |||| Sbjct 297 TATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCA 238 Query 40663 TACTGGTGTGATTCCTTTCTGGAAACATATTCAAACCGCTGTTAAATCCTGTTCACAGGG 40722 ||||||| |||||||| | |||||| |||||| ||||| ||||||||||| || || Sbjct 237 TACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGG 178 Query 40723 TGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAA 40782 || ||| | ||||| || ||||| | | |||||| | |||||| | ||| |||||| Sbjct 177 AGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAG 118 Query 40783 CCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTA 40842 | | || || || || || | ||| | |||||||| | || ||||| ||||||| Sbjct 117 TTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTA 58 Query 40843 TGGTGTACAGCTTAACCAGTTGATGTATAAACGCTTA 40879 || ||||| |||| | ||||||||| || | ||| Sbjct 57 TGCAGTACAAATTAATAAATTGATGTATCAAAGATTA 21 >seq249645 Length=476466 Score = 170 bits (188), Expect = 2e-37 Identities = 318/463 (69%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 40447 CAAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTC 40506 |||| | || ||||| || ||||| ||| | ||||| ||||| || |||| ||||| Sbjct 264546 CAAAATCTCACTACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAG 264605 Query 40507 CAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT-- 40564 | || || |||| |||| |||||| | | ||| | ||||| ||| || Sbjct 264606 CTCGTGCGTCTTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCC---ACCACTAG 264662 Query 40565 -GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCG 40623 || ||||| ||| | ||||| ||||||||||| || | ||||| || | ||| || Sbjct 264663 CGCCATCGTACGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCG 264722 Query 40624 CGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCT 40682 || | ||| |||||||| |||||||| |||||||| ||| |||||||| | Sbjct 264723 TGCCCTTGGTAGCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGT-ATTCCTTTTT 264781 Query 40683 GGAAACATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTG 40742 ||| | ||||| || ||||||| ||| ||||| |||||||| ||||| ||||||| Sbjct 264782 ATAAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTG 264841 Query 40743 CAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACA 40802 | || ||| || || | |||||| | |||||||| | ||||| | || || | Sbjct 264842 CGACGTTGTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATA 264901 Query 40803 ACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGT 40862 || || || ||||| ||||| || |||||| | || || || |||||| | ||| | Sbjct 264902 ACCGCGGTGTTGAAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAA 264961 Query 40863 TGATGTATAAACGCTTAATGAATCGTGATTACATTACGCTGTT 40905 |||||| | ||| | || || || | |||| |||| || Sbjct 264962 CGATGTACACGCGCCTCATCAAAGGTCAAGACATCTCGCTATT 265004 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/164 (72%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 42747 TGTACCTGTGTATGCACGCTGTGAACGCTCTGGAAGCGATCCGTTTCTATGTGTCGTTTA 42806 |||| ||||| || || || |||| || ||||| || ||||||||||| |||||| Sbjct 268765 TGTATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTG 268824 Query 42807 GTTTCACCTTTAACTTTGCTGAACAAGGCAA---GATGGAAGGCAACGCGAAAATTATGC 42863 || | | ||| |||||||| | |||| ||||||||| || || ||||| || Sbjct 268825 CTTGCTCGTTTGCGTTTGCTGAGC---GCAAATTGATGGAAGGTAATGCCAAAATCATTA 268881 Query 42864 GCCTGATTGCGCGTGATGAAGCATTGCATCAGAAAGGTACTCAG 42907 || || || ||||||||||| ||||| || |||||| ||| Sbjct 268882 AGCTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCAG 268925 >seq244327 Length=1302 Score = 107 bits (118), Expect = 2e-18 Identities = 225/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 42177 AACCTATGTTTTTTGGTGAAGATACTGGTGTTGCACGTTATGAATCGCAGAAACACAAAG 42236 |||||||||||||||| || | | |||| || ||||| ||| ||| | || Sbjct 1179 AACCTATGTTTTTTGGACAACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAATA 1120 Query 42237 TTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42296 |||| |||| | | ||||||| || ||||| || ||| | || |||||| | |||| Sbjct 1119 TTTTTGAAAAATTAATTGAAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGATC 1060 Query 42297 TGTCTACTGACCGTATGCAGTATGCAAAACTT-CCTGAACATGAAAAAATCATTTTCGAT 42355 | ||| || | || | | | ||||| || ||||||||||||||| ||||| | Sbjct 1059 TCTCTCGAGATAGAATAGATTTT-CAAAATTTACCTGAACATGAAAAACATATTTTTCTT 1001 Query 42356 TCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCA 42415 ||| || | |||||||| | ||||| | ||||| ||| | | |||||| | || Sbjct 1000 AGTAATTTAAAATATCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCT 941 Query 42416 TTTTTGCCAATTGCATCCGATGTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAGT 42475 ||| | |||||| || | | | ||||||||||| ||||| ||| | ||| Sbjct 940 TTTCTACCAATTATTTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCG 881 Query 42476 GAAACCATCCACAGCCGTAGTTACACGCATATT 42508 ||||| || ||| ||| ||| || |||||| Sbjct 880 GAAACTATTCACTCACGTTCTTATACTCATATT 848 >seq76715 Length=41281 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 50860 GGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTTGAACAT 50919 ||||| ||||||||||| || || || ||||||||| || || |||||| | |||||| Sbjct 9079 GGACACCATTTAAACGTCAATGTCTTTGACCGCGAAACCCTGCTCGATGCGATGGAACAT 9020 Query 50920 CCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTTAACTCA 50979 || ||| || ||||| | || ||||||||||| ||||| || || || | | | Sbjct 9019 CCGGAACTCTATCCACAACTGACAATCCGTGTTTCCGGTTACGCCGTCAACTTCATCAAA 8960 Query 50980 CTGACCCCTGAACAGCAACGCGACGTTATC 51009 |||| | |||||| || ||| || ||| Sbjct 8959 TTGACGCGTGAACAACAGATCGATGTCATC 8930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556129706078240