Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq249645 134 1e-26 >seq249645 Length=476466 Score = 134 bits (148), Expect = 1e-26 Identities = 211/302 (70%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 76454 CTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTGGTGTCGGATACGATCGGCAG 76513 |||| ||||| ||| ||||| | ||| || || || | | || || | ||||| Sbjct 268532 CTCAGAGAACGACCATGTCTCAATCCACGTCTCAAGCTCAGGGATAGACACTAGCGGCAA 268473 Query 76514 AAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTT 76573 || || |||| || | ||| || || | ||| || || ||| |||| ||||| ||||| Sbjct 268472 TAGTACCACGTTTGGACTACGACCTTGGATAGAGTCGAGTAGGGTCTGATACTTAAGGTT 268413 Query 76574 GCTGATGAAGATGTGCTTCTCGTGATCCGGCAGGTTCATGTAGTCGATTCGGTCACGGGT 76633 ||| | || ||||||| |||||| | ||||| | | || || ||||| || | Sbjct 268412 GCTCAAAAATATGTGCTGCTCGTGGGATGATAGGTTGCTAAAATCCATACGGTCGCGTGA 268353 Query 76634 CACGTTAACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAA 76693 ||| | ||||||||| || ||||| ||||||| || ||||||||||||| | ||| || Sbjct 268352 CACATCAACTTCTTCTGGACGCCAAAAGAACGACAACTGCTTTTCAATCAATTGCTCAAA 268293 Query 76694 CTTCGCATGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGG 76753 | | ||||| || ||||| ||||| | ||||| | || || | ||||||||| Sbjct 268292 GATTGGGTGTTTTTGTTGGTCATAGCGCGCTACGTTGACGGGCTGACCAAAGAACATCGG 268233 Query 76754 CT 76755 || Sbjct 268232 CT 268231 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 77776 CACGAGGGGGCTCGAATCCGTTGGTGGAGTTGGTGATTTGGCTGGATGTCTCGCAAGGCA 77835 |||| || ||||||| |||||||| | |||| ||| || || || || || | |||| Sbjct 265855 CACGTGGTGGCTCGATACCGTTGGTCGCATTGGCGATCTGACTTGAGGTTTCAGACGGCA 265796 Query 77836 TCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATGGCGATGTCGATACGCAGCTTTT 77895 ||| | || || || ||||| ||||| || || | ||| ||| ||| ||| ||| Sbjct 265795 TCAAGGCGGTTAGGGTAGAGTTGCGCAGACCGTGCTCAGTGATCTCGCCACGTAGCGTTT 265736 Query 77896 CCCAATCCATCTTCAGTTCCGCAGTGTGGAGTCCATCCACTTCTTTCTTGTAACGGTCGA 77955 ||||||| | | ||| | | | || ||||| ||||| ||||| || | Sbjct 265735 CCCAATCTAAATGTAGTGGCTCTTGGCAGATCTTATCCAAGTCTTTTTTGTACGTATCAA 265676 Query 77956 TCGGTAGAATACCCTGAGAGTAGGTGGTCTCGTGGAA 77992 |||| | ||||| || |||||||||||||| | ||| Sbjct 265675 TCGGCAAGATACCTTGTGAGTAGGTGGTCTCATTGAA 265639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453867642021920