Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq26767 188 7e-43 seq158858 87.8 2e-12 >seq26767 Length=1149 Score = 188 bits (208), Expect = 7e-43 Identities = 310/447 (69%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 133783 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 133842 |||||| | ||| ||||| | | ||||| | ||||| | | ||||| || | || Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 133843 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133902 | || || ||||| || || | |||||| |||| |||||| ||||||||| | | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 133903 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133962 ||| || || ||||| | || || ||||||||||| |||||||| ||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 133963 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 134022 ||| | |||||||| |||||||| | |||||||||| | ||| ||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 134023 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 134082 || ||||| | || || || || || || || ||||| | | ||| || | ||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 134083 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 134142 | || | | || |||||||||| || ||| || |||||| | ||||| || Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 392 Query 134143 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTG 134202 ||||| || ||||||||||| | | | || | |||||| ||||| || || ||||| | Sbjct 393 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 452 Query 134203 GCGAGTAGATACAGCATCATAAAAACG 134229 | ||| || | |||| ||||||||| Sbjct 453 GAAAGTTGAAATGGCATTATAAAAACG 479 >seq158858 Length=235449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 62010 TTGGCTGGGAATACTGGGCTCGAACCAGTGCATCCCGGAATCAAAATCCGGTGCCTTACC 62069 |||||||||||| | | |||||| | ||||| || ||||| || ||||||||| Sbjct 162462 TTGGCTGGGAATGATAGATTCGAACTACCGCATCAGAGAGTCAAAGTCTCTTGCCTTACC 162403 Query 62070 AACTTGGCTAATTCCCAAT-TATTTGGTGGCCCTTGCTGGTTTCGATCCAGCTACCTATC 62128 ||||||||||||||||| || || |||| |||| | | |||| | | | |||| || Sbjct 162402 -GCTTGGCTAATTCCCAATATAATTAATGGCTCTTGATTGAATCGAACAATCGACCTCTC 162344 Query 62129 AGTTATGAGCTGACAGCTCT--CCCATTGAGCTAAAGGGCC 62167 ||||||| || ||||| || | |||||||||| ||| Sbjct 162343 CCTTATGAGGGGAACGCTCTAACCAACTGAGCTAAAGAGCC 162303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510867006069280