Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020484.1 Length=147284 Score E Sequences producing significant alignments: (Bits) Value seq9728 91.5 1e-13 seq26767 84.2 2e-11 >seq9728 Length=518 Score = 91.5 bits (100), Expect = 1e-13 Identities = 232/352 (66%), Gaps = 12/352 (3%) Strand=Plus/Minus Query 120388 ATGAAAGAAAAACATCTATAAAGAAAAAGAAAGTCAACGCACAAGATTTGTTTATGTCAA 120447 |||||| ||| | | |||| |||||| | | || ||| |||||| ||| || || Sbjct 518 ATGAAAAAAATAAAAATATACGGAAAAAAAGTATAAAAGCATTAGATTTATTTTCGTTAA 459 Query 120448 TCTTAAAAGAAAGAGCAGAAACAGGTCGTATCTATATTATGAACATTGACCATGTTAATA 120507 || | |||||||| || ||||| ||||| ||||| || | || ||| |||| Sbjct 458 TCATGCAAGAAAGAACATCTACAGGACGTATTTATATACAAAATGTAGATCATTGTAATT 399 Query 120508 CTCATTCATCTTTTAAAGATAAAGTA-----AACATG----TCTAATCTATGCCAAGAGA 120558 | ||| | ||||| |||| || || | | |||||| ||||| ||| | Sbjct 398 CACATAGTGCATTTAATCCTAAATTATCTCCAATAAGACAATCTAATTTATGCTTAGAAA 339 Query 120559 TTACATTACCAACAGAACCTATTAGTCACATTGACGGTGAA---GGTGAGATTGCATTGT 120615 |||| ||||| || || || | | | | ||||| | | || || || |||||| | | Sbjct 338 TTACTTTACCCACTAAATCTTTAAATAATATTGATGATAAAAAAGGAGAAATTGCACTTT 279 Query 120616 GTATTCTATCTGCTATCAATATGGGTGCAATTAATGATAAAGAAGAATTAGAAAACCTTT 120675 ||| |||||||| | ||| | || | |||||| || | ||| || || | | | Sbjct 278 GTACATTATCTGCTTTTAATTTAGGAACTATTAATAATCTAACAGATTTTAAAGAATTAT 219 Query 120676 GTGATTTATCTGTAAGAGGACTAGAAGAAATAATTGACCATCAAAATTATCC 120727 || ||||| || | | ||| || |||||| | || ||||||||||||| Sbjct 218 CTGTATTATCAGTTCGTGCACTTGATGAAATATTAGAATATCAAAATTATCC 167 >seq26767 Length=1149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 327/509 (64%), Gaps = 24/509 (5%) Strand=Plus/Minus Query 119742 ATATTTGAAACACCACAATTCATGTATATGTT--AATCTCTGCTACATTATTCAGAAATT 119799 |||| ||||| | ||||| | |||||||| ||| ||||| ||||| || | Sbjct 569 ATATATGAAAGCGCCCAATT--TTTATATGTTCTAATATCTGCGTGCTTATTTTCTAAAT 512 Query 119800 ACTCAAAAGAAAAAAGGATGAGTTATGTTAAAAAATATTATAACGCAATATCAACCCACC 119859 | | ||| | | || |||| ||| ||| | | |||||| || || ||||| Sbjct 511 ATCCCAAAAATATTAGAATGAATTACGTTCAGCGTTTTTATAATGCCATTTCAAC----- 457 Query 119860 TTATCAACATTCCT------ACTCCGGTCATGGCAGGTGTTAGGACTCCTATTCGCCAGT 119913 | |||| ||| || || || | ||| | || ||||| ||||||| ||| || | Sbjct 456 -TTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAAT 398 Query 119914 AT-GCTAGTTGTGTCCTTGTGGATGTTGATGATACTTTACCTAGTATCTTCTCTAGCGAT 119972 | ||| | |||| | | || |||||||| | || | ||| | ||| | Sbjct 397 TTAGCTCAT-GTGTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACT 339 Query 119973 ATGGCTATTGGGTCATATGTTGCTCAAAGGGCTGGCATTGGTATCAATGCTGGCAGAATT 120032 | |||||| ||||||| ||||| | || || |||||||| |||||||| | |||| Sbjct 338 AGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATT 279 Query 120033 AGGGGAATTAATAGTCGTATCCG---TGGCGGAGAAGTTCAACATACCGGCGTTGTCCCA 120089 | | | | ||||| ||| | ||||| || | |||| ||| || | | || Sbjct 278 CGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCA---TACTGGTTGTATTCCT 222 Query 120090 TTTCTTAAAAAGTTTGAGGCAACGGTCAAGTGTTGTACACAAAACGGTGTTAGAGGCGGT 120149 ||| |||| | ||| | | || || | ||| | ||| || |||||||| || Sbjct 221 TTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGA 162 Query 120150 TCAGCAACTGTACACTTTCCTATTTGGCACCAAGAAATAGAAGATATACTTGTTTTAAAA 120209 | |||||| || | ||| || ||||| ||||| ||| | || | ||||||||| Sbjct 161 GCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAA 102 Query 120210 AACAATAAAGGTACGGAAGATAATAGAGT 120238 || |||| || | ||||| |||||||| Sbjct 101 AATAATAGGGGCATTGAAGAAAATAGAGT 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469606891214720