Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq28607 693 0.0 seq218717 163 3e-35 seq207321 102 9e-17 seq180749 95.1 1e-14 seq158858 86.0 7e-12 seq48658 84.2 2e-11 >seq28607 Length=83266 Score = 693 bits (768), Expect = 0.0 Identities = 752/996 (76%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | |||||||| || || || ||||| |||| ||||| || || || Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 160936 ATGATTCC---CTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCT 160992 ||||| || || ||| ||| || || ||| | | ||| || ||| ||| |||| Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC---GCATTCATTGCTGCT 1386 Query 160993 CCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAAC 161052 || || || || || || || ||||||||||| || |||| || || | || |||||| Sbjct 1385 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 1326 Query 161053 AACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCC 161112 || || || || ||||| |||| ||| ||||| ||||| ||| |||| || ||||| Sbjct 1325 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCG 1266 Query 161113 ATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 161172 ||||||||||| ||| | || |||||||| |||||||| ||||||| |||| || Sbjct 1265 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 1206 Query 161173 GTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 161232 || | ||||| | |||| | | ||| ||||||||||||||||||||| || | Sbjct 1205 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1146 Query 161233 CGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 161292 |||||||| ||||||||||||||| || ||||| || |||||||| || || || | | Sbjct 1145 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 1086 Query 161293 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 161352 || || ||| || |||| || | |||||||| ||| ||||||| |||||||| || Sbjct 1085 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1026 Query 161353 ATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCAC 161412 ||||||||||| ||||||| ||| |||| ||||| || |||||||||||||| |||||| Sbjct 1025 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 966 Query 161413 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 161472 || || || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| Sbjct 965 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 906 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 ||||| |||| || ||| || | | |||||||| ||||| || || || | Sbjct 905 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 846 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTC 161592 |||||||| ||||| ||||||||||| || |||||||| || ||||| || || || || Sbjct 845 GGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 786 Query 161593 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTT 161652 || || |||| |||||||| ||| |||||||| || || || | || |||||| | Sbjct 785 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 726 Query 161653 GCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 161712 || |||||||| || || || || ||||| ||||| | || | ||||||||||| ||| Sbjct 725 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTC 666 Query 161713 AACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAAC 161772 ||||| ||||||||||| |||||||| || | ||||||||||| || ||||| || Sbjct 665 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 606 Query 161773 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAAT 161832 || ||||| || || | ||||||||| ||||| |||||||| ||||| || || ||| Sbjct 605 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 546 Query 161833 GCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 161868 ||||||||||||||||| ||||| ||||||| |||| Sbjct 545 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510 Score = 529 bits (586), Expect = 2e-145 Identities = 729/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||| ||||||||||| || |||||||| Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| | ||| | ||||||||| | || || || || || Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT 162296 || || ||||||||||| ||| | || ||||||||| | || ||| || ||| | Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583 Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356 || || || ||||| ||||| || | | | | |||||| | || | || |||||| Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643 Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416 ||||| | ||||| || || | || ||||| ||| | || || || ||| ||||||| Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703 Query 162417 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 162476 || |||||||| || || ||| | |||||||| ||| | || || |||||||| || ||| Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763 Query 162477 CTTATCGGT---ATT-CGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATT 162532 || || ||| || ||||| ||||| || || ||||| ||||| |||||||| || Sbjct 32764 ----TCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTT 32819 Query 162533 CGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTT 162592 ||| ||| || || || ||||| |||| ||||| |||||||| || || || Sbjct 32820 TGTTTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTT 32879 Query 162593 CGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCT 162652 || || || || || || |||||| | ||||| |||||||||| ||||| ||||| | Sbjct 32880 TGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATT 32939 Query 162653 AAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTAT 162712 || || ||||| |||||||| || || ||| | || || | || |||| | ||||| Sbjct 32940 GAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTAT 32999 Query 162713 TCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAA 162772 |||||| | || || |||||||| | | |||||||| || ||||| || || Sbjct 33000 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 33059 Query 162773 AGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTG 162832 || ||| || | || || | |||||||| ||||| ||||| || || |||||||| || Sbjct 33060 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 33119 Query 162833 GTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTT 162892 |||||| || || || |||||||| || || |||||||| |||||||||||| | || Sbjct 33120 GTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 33179 Query 162893 TGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCT 162952 ||| || || | ||| | |||| ||| || | || | | || || ||| | || || Sbjct 33180 TGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCT 33239 Query 162953 TCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGAC 163012 ||||| || ||||| || || || ||| | ||||| || ||||| || || |||||||| Sbjct 33240 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGAC 33299 Query 163013 GTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGA 163072 |||||||| || || |||||| | || ||||| |||| || ||| | || | || Sbjct 33300 TTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 33359 Query 163073 CCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 || |||||||| ||| || | |||||||| ||||| | ||| | || |||||||| Sbjct 33360 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 65466 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 65407 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 65406 CCTGTCATCCCTACCTAT 65389 >seq218717 Length=448 Score = 163 bits (180), Expect = 3e-35 Identities = 169/220 (77%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 ||| ||| ||||||||||||||||| || ||||||| ||||||||||||||| || Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGT 168 Query 161262 AGCATACTCTGCTCCTGTC-GCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTC 161320 ||||| || |||||||| || || || | || || ||| || | ||||| | |||| Sbjct 167 TGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTC 108 Query 161321 AAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTG 161380 |||| ||| | | ||| |||||||| || |||||| |||| ||||||| || ||| Sbjct 107 AAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTG 48 Query 161381 TCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCA 161420 | ||||| || |||||||||||||| |||||||| || || Sbjct 47 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8 >seq207321 Length=8752 Score = 102 bits (112), Expect = 9e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||| ||||| ||| ||| |||| ||||||||||| ||||| || |||| | ||| Sbjct 6155 GTGCGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGATTTGCCTTA 6214 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||| | || |||| || || || || ||||||||||||||| ||| || Sbjct 6215 CTCATGCCGTTCTGGTTCTTGCTCTAGCTGCGCCGGTAAACTCGTCTCTGGCTTCGTTGA 6274 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGA 158483 ||| |||||| |||| ||||||| |||||||| || Sbjct 6275 CCAGTCCGACCAAAGCTTCTTGGACGACGACCAAATGGA 6313 >seq180749 Length=15184 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 158326 TGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTAC 158385 || ||||||||| ||| |||| ||||||||||| ||||| || |||| | |||| Sbjct 10940 TGCGAAGACGACGTTTACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTAC 10999 Query 158386 TCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGAC 158445 || ||||| | || | ||||| ||||| || ||| | ||||| || || || Sbjct 11000 TCTTGCCGCTCTGGTTCATGTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGAACTGTTGAT 11059 Query 158446 CAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGT 158505 || |||||| ||||| || ||||| || || | | || || |||| |||||| Sbjct 11060 CAGTCTGACCAGAGTTTCCTCGATGATGATCAGATTGCTGAAGGATTTGTTCTCACTTGT 11119 Query 158506 GTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 | | |||||||||| |||| | |||||||| |||| ||||| || Sbjct 11120 GCTGCTTATCCTACCTCTGATGTTACCATTGAGACCCACAAAGAAGAAGA 11169 >seq158858 Length=235449 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 157692 GGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAATC 157751 || |||||| ||||||||||| || ||||||||||||||| ||||||| ||||||||| Sbjct 162647 GGATGTAGCTCAGCTTGGTAGAGCACTTGCTTTGGGAGCAAGGGGTCGCATGTTCGAATC 162706 Query 157752 CTGTCACCCCGACTT 157766 ||||| || ||||| Sbjct 162707 GTGTCATCCGGACTT 162721 >seq48658 Length=532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 156615 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 156673 |||||||||||||||||||||| ||||||||||| || |||||||||||| | |||||| Sbjct 357 TAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTCAAATCCTGT 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545917532640480