Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq28607 536 4e-148 seq218717 131 5e-26 >seq28607 Length=83266 Score = 536 bits (594), Expect = 4e-148 Identities = 714/987 (72%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 519 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 578 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 579 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 638 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || |||||||| ||| || || | || |||| Sbjct 639 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAAAGCAGTAAA 698 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 699 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 758 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || |||||||| || ||||| || || || Sbjct 759 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGT 818 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||||| || || | || ||| ||| || || ||||| || Sbjct 819 TTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 878 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 879 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 938 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 939 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 998 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 999 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 1058 Query 18374 TCCAAAAGGATA-AACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430 |||| || || | | ||||| || || || |||||||| || || || ||||| || Sbjct 1059 ACCAATTGGGTAGATCAAGAAA-AC--AGCAGTTGCAGCTGCAACAGGAGCTGAATATGC 1115 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| || |||||||| || | ||||||||||||| | || ||||| || Sbjct 1116 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 1175 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | || | | |||||| | ||||| |||| ||| || || ||||| |||| Sbjct 1176 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAG 1235 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| || || | || ||||||||||||||| ||||| || || | ||| || || ||| Sbjct 1236 CCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGA 1295 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | || | || || ||||| || || |||||||| || || | | ||| || ||||| Sbjct 1296 AGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 1355 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | Sbjct 1356 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGA 1415 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||| || | | ||||||||| | || |||||||| || | ||| || || || Sbjct 1416 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 1475 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 1476 TTCAGTGCTGGTTATCCAGTTACAGAA 1502 >seq218717 Length=448 Score = 131 bits (144), Expect = 5e-26 Identities = 164/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 18273 TGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTA 18332 || || || |||||||| || ||||| || || |||||||| | || || ||||||||| Sbjct 8 TGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGTA 67 Query 18333 CCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAG 18391 | || || ||||||||||||| | | ||||| ||||| |||| ||||||| | || Sbjct 68 CAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAAG 127 Query 18392 AAATACTGAGAAGGCAGCTGC-TACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCA 18450 ||| || | |||||||| || || || ||||| |||||| |||||| || |||| Sbjct 128 AAA-ACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCA 186 Query 18451 TACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 |||| || | ||||||||||||| | || | ||| ||| Sbjct 187 TACCCAGACATAAACTAAGTTCCCACTCACGACTCATATAA 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150838216403432