Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 562 4e-155
seq218717 109 7e-19
seq249645 98.7 1e-15
seq134954 87.8 2e-12
seq207321 86.0 8e-12
>seq28607
Length=83266
Score = 562 bits (622), Expect = 4e-155
Identities = 735/1016 (72%), Gaps = 6/1016 (1%)
Strand=Plus/Minus
Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769
|||||||| || | ||| | ||||| ||||| |||| || ||||||||| || |||||
Sbjct 33416 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 33357
Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829
| |||| ||| ||||| | |||||| || || || || || || || ||||| |||
Sbjct 33356 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 33297
Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889
|| || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| |||
Sbjct 33296 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 33237
Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949
|| | ||| || || | | || | | ||| |||| | ||| | || || |||||
Sbjct 33236 TTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 33177
Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009
| |||||||||||| ||||| | ||||| ||| |||| ||||||||||| |||||
Sbjct 33176 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 33117
Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069
|| ||||| || || |||||||||||||| ||||| |||| || | | || || |
Sbjct 33116 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 33057
Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129
|| || ||||| ||||||||||||| | | ||| || || ||||| |||| || ||
Sbjct 33056 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 32997
Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189
|| | ||||| || | ||||| | ||| || || ||||||||||| |||||||| |
Sbjct 32996 GCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 32937
Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249
||||| ||||| || || || | ||||| | ||||| |||||| || || ||||||||
Sbjct 32936 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 32877
Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309
|||||||||||||||| || || || || ||||| || || || ||| ||||||
Sbjct 32876 CTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAAGACAGAAACAAAA 32817
Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369
||||| || || |||||||| || || ||||| || || || | | || | | |||
Sbjct 32816 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACGGATCGAGCA 32757
Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429
| || |||||||| | ||| ||||| || | || || || ||||||||||| ||||||
Sbjct 32756 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAAA 32697
Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489
||||| || || || | ||| ||| | ||||||||||| ||||||||||||||
Sbjct 32696 GCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 32637
Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549
|||| | | |||||| | | | | |||||| || || || ||||| || | |||
Sbjct 32636 AGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACGGCAGCGGTTAAAAAA 32577
Query 102550 TTAGCACCTTCAAGGTA---ACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606
|| |||||| | || ||||| | | || || |||||||| ||||| ||||
Sbjct 32576 TTGCAACCTTCTAAATAGGAACTAGCC---AATCCATGAGTATACCATGAAGTTACAAAG 32520
Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666
|| || || || | ||| ||||| | |||| ||| ||| ||||| || | ||| |||
Sbjct 32519 GTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCA 32460
Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722
|||||||| ||||| || ||||| || | | ||||||||||| || |||||
Sbjct 32459 GACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 32404
Score = 554 bits (614), Expect = 6e-153
Identities = 703/972 (72%), Gaps = 6/972 (1%)
Strand=Plus/Plus
Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221
|| ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| |||||
Sbjct 507 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 566
Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281
|||||| || ||| ||||| | || || ||||| || || | ||||| || ||||
Sbjct 567 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 626
Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341
||||| | || |||||||| ||||| || || |||||||| ||||||||||||| |||
Sbjct 627 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACC 686
Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401
| || || ||||| ||||| ||||| || |
Sbjct 687 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 746
Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461
|| |||||||| || |||||||||||||| || || || ||||||||||| |||||
Sbjct 747 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 806
Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521
|||||||| || ||||| ||||||||||| |||||||| | || ||||||| ||||
Sbjct 807 AATGTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTC 866
Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580
|| || || | || | | | || | || |||| ||||| ||||||||||| || || |
Sbjct 867 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTAAATAGGG 925
Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640
| || ||||| || ||||| || || | |||||| || |||||||| |||||||| || |
Sbjct 926 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 985
Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700
| || ||||| || | ||| ||||||| || || || || || | ||||||| |||| |
Sbjct 986 CAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 1045
Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAG 103760
| || |||||||||| ||||||| |||||| || || | ||||| ||||||||||
Sbjct 1046 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAG 1105
Query 103761 CAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCAC 103820
| || ||||| ||| ||||| || ||||| ||||||||| | | |||||||||||
Sbjct 1106 CTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCAC 1165
Query 103821 GTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880
| |||||||| | | |||| | ||||| | || | |||| ||||||| |
Sbjct 1166 GACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGC 1225
Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940
|||| || ||||| ||||||| ||||| |||||||| || || || || || | |||||
Sbjct 1226 CGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAA 1285
Query 103941 TTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGA 103998
| || || || || |||| || ||||| || || || ||||| ||||| | || ||
Sbjct 1286 TAGC--TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1343
Query 103999 ACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAAC 104058
|||| || ||||||||||| || || ||||| || ||||| || || | ||| || |
Sbjct 1344 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1403
Query 104059 GATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAAC 104118
|| || | ||||| | ||| | || |||||||||| ||||| ||||| ||||
Sbjct 1404 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1463
Query 104119 ATAGAGACGGTT 104130
|| ||||| ||
Sbjct 1464 GTAAAGACGATT 1475
>seq218717
Length=448
Score = 109 bits (120), Expect = 7e-19
Identities = 157/220 (71%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 103612 GTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGT 103671
||| || |||||||| |||||||| || || || ||||| || | || ||||||| ||
Sbjct 7 GTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGT 66
Query 103672 TCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAA 103731
| || || || | ||||||| ||| | || |||||||||| || || | |||
Sbjct 67 ACAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAA 126
Query 103732 GAATACTGCGGACGCAGCCGCAA-CAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCA 103790
||| || | ||||| |||| ||||||| || ||||| ||| ||||| || ||||
Sbjct 127 GAAAACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCA 186
Query 103791 TGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATA 103830
| ||||||| | | |||||||||||| | ||||||
Sbjct 187 TACCCAGACATAAACTAAGTTCCCACTCACGACTCATATA 226
>seq249645
Length=476466
Score = 98.7 bits (108), Expect = 1e-15
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 116025 TCATCACGAGCAATCAGACCGATGATCTTTGCATTGCCTTCCATCATCTTGAGTTCACCA 116084
||||||||||| || || ||||| || ||||| |||||||||| ||| | ||| ||
Sbjct 268900 TCATCACGAGCGATGAGCTTAATGATTTTGGCATTACCTTCCATCAATTTGCGCTCAGCA 268841
Query 116085 AAAGCAAACGAGCAAGCGAAAGAAACATAGAAACGAATACCCTCAAGGA 116133
|| |||||||||||||| || || |||||||||||||| | || ||||
Sbjct 268840 AACGCAAACGAGCAAGCAAACGAGACATAGAAACGAATGGCTTCTAGGA 268792
>seq134954
Length=2254
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 102911 TCAATCTTACCAGCACAAGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACA 102970
|| ||||||||||| ||||| |||||||||||||| | || || ||||||| |||||
Sbjct 8 TCGATCTTACCAGCGCAAGTGGAACACGCACCAGCTCTGCAAGAGTAAGGCAAGTCAACT 67
Query 102971 CCTGCTTCATCAGCAGCGTCTAGAATATATTGATCATC 103008
||||| || ||||| || || | || ||||| |||||
Sbjct 68 CCTGCCTCTTCAGCTGCATCCAAGATGTATTGGTCATC 105
>seq207321
Length=8752
Score = 86.0 bits (94), Expect = 8e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871
||||| ||||||||||| || || ||||| | ||| | ||| |||| | ||| |||||
Sbjct 6358 ACATCAGAAGTTGGGTAAGCGACACAGGTTAAGACATAGCCTTCTTCCATTTGGTCGTCG 6299
Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931
|||| ||| ||| || || || || || || | | ||||| || || ||
Sbjct 6298 TCCAAGAAGCTTTGGTCGGACTGGTCAACGAAGCCAGAGACGAGTTTACCGGCGCAGCTA 6239
Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991
|| || | ||||| ||| || || ||||||| ||| | || ||||| ||||| |||||
Sbjct 6238 GAGCAAGAACCAGAACGGCATGAGTAAGGCAAATCGATTCCGGCTTCTTCAGCTGCGTCG 6179
Query 102992 AG 102993
||
Sbjct 6178 AG 6177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631397442846240
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