Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq28607 562 4e-155 seq218717 109 7e-19 seq249645 98.7 1e-15 seq134954 87.8 2e-12 seq207321 86.0 8e-12 >seq28607 Length=83266 Score = 562 bits (622), Expect = 4e-155 Identities = 735/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 33416 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 33357 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || || ||||| ||| Sbjct 33356 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 33297 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 33296 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 33237 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| || || | | || | | ||| |||| | ||| | || || ||||| Sbjct 33236 TTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 33177 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 33176 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 33117 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 33116 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 33057 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 33056 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 32997 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | ||||| | ||| || || ||||||||||| |||||||| | Sbjct 32996 GCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 32937 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| || || |||||||| Sbjct 32936 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 32877 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || || || ||| |||||| Sbjct 32876 CTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAAGACAGAAACAAAA 32817 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | ||| Sbjct 32816 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACGGATCGAGCA 32757 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || | || || || ||||||||||| |||||| Sbjct 32756 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAAA 32697 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 ||||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 32696 GCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 32637 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || || ||||| || | ||| Sbjct 32636 AGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACGGCAGCGGTTAAAAAA 32577 Query 102550 TTAGCACCTTCAAGGTA---ACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 || |||||| | || ||||| | | || || |||||||| ||||| |||| Sbjct 32576 TTGCAACCTTCTAAATAGGAACTAGCC---AATCCATGAGTATACCATGAAGTTACAAAG 32520 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || || || | ||| ||||| | |||| ||| ||| ||||| || | ||| ||| Sbjct 32519 GTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCA 32460 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||||| ||||| || ||||| || | | ||||||||||| || ||||| Sbjct 32459 GACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 32404 Score = 554 bits (614), Expect = 6e-153 Identities = 703/972 (72%), Gaps = 6/972 (1%) Strand=Plus/Plus Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221 || ||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||| Sbjct 507 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 566 Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281 |||||| || ||| ||||| | || || ||||| || || | ||||| || |||| Sbjct 567 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 626 Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||||| | || |||||||| ||||| || || |||||||| ||||||||||||| ||| Sbjct 627 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACC 686 Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401 | || || ||||| ||||| ||||| || | Sbjct 687 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 746 Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461 || |||||||| || |||||||||||||| || || || ||||||||||| ||||| Sbjct 747 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 806 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 |||||||| || ||||| ||||||||||| |||||||| | || ||||||| |||| Sbjct 807 AATGTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTC 866 Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580 || || || | || | | | || | || |||| ||||| ||||||||||| || || | Sbjct 867 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTAAATAGGG 925 Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640 | || ||||| || ||||| || || | |||||| || |||||||| |||||||| || | Sbjct 926 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 985 Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700 | || ||||| || | ||| ||||||| || || || || || | ||||||| |||| | Sbjct 986 CAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 1045 Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAG 103760 | || |||||||||| ||||||| |||||| || || | ||||| |||||||||| Sbjct 1046 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAG 1105 Query 103761 CAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCAC 103820 | || ||||| ||| ||||| || ||||| ||||||||| | | ||||||||||| Sbjct 1106 CTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCAC 1165 Query 103821 GTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880 | |||||||| | | |||| | ||||| | || | |||| ||||||| | Sbjct 1166 GACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGC 1225 Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940 |||| || ||||| ||||||| ||||| |||||||| || || || || || | ||||| Sbjct 1226 CGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAA 1285 Query 103941 TTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGA 103998 | || || || || |||| || ||||| || || || ||||| ||||| | || || Sbjct 1286 TAGC--TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1343 Query 103999 ACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAAC 104058 |||| || ||||||||||| || || ||||| || ||||| || || | ||| || | Sbjct 1344 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1403 Query 104059 GATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAAC 104118 || || | ||||| | ||| | || |||||||||| ||||| ||||| |||| Sbjct 1404 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1463 Query 104119 ATAGAGACGGTT 104130 || ||||| || Sbjct 1464 GTAAAGACGATT 1475 >seq218717 Length=448 Score = 109 bits (120), Expect = 7e-19 Identities = 157/220 (71%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 103612 GTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGT 103671 ||| || |||||||| |||||||| || || || ||||| || | || ||||||| || Sbjct 7 GTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGT 66 Query 103672 TCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAA 103731 | || || || | ||||||| ||| | || |||||||||| || || | ||| Sbjct 67 ACAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAA 126 Query 103732 GAATACTGCGGACGCAGCCGCAA-CAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCA 103790 ||| || | ||||| |||| ||||||| || ||||| ||| ||||| || |||| Sbjct 127 GAAAACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCA 186 Query 103791 TGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATA 103830 | ||||||| | | |||||||||||| | |||||| Sbjct 187 TACCCAGACATAAACTAAGTTCCCACTCACGACTCATATA 226 >seq249645 Length=476466 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 116025 TCATCACGAGCAATCAGACCGATGATCTTTGCATTGCCTTCCATCATCTTGAGTTCACCA 116084 ||||||||||| || || ||||| || ||||| |||||||||| ||| | ||| || Sbjct 268900 TCATCACGAGCGATGAGCTTAATGATTTTGGCATTACCTTCCATCAATTTGCGCTCAGCA 268841 Query 116085 AAAGCAAACGAGCAAGCGAAAGAAACATAGAAACGAATACCCTCAAGGA 116133 || |||||||||||||| || || |||||||||||||| | || |||| Sbjct 268840 AACGCAAACGAGCAAGCAAACGAGACATAGAAACGAATGGCTTCTAGGA 268792 >seq134954 Length=2254 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 102911 TCAATCTTACCAGCACAAGTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACA 102970 || ||||||||||| ||||| |||||||||||||| | || || ||||||| ||||| Sbjct 8 TCGATCTTACCAGCGCAAGTGGAACACGCACCAGCTCTGCAAGAGTAAGGCAAGTCAACT 67 Query 102971 CCTGCTTCATCAGCAGCGTCTAGAATATATTGATCATC 103008 ||||| || ||||| || || | || ||||| ||||| Sbjct 68 CCTGCCTCTTCAGCTGCATCCAAGATGTATTGGTCATC 105 >seq207321 Length=8752 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| ||||||||||| || || ||||| | ||| | ||| |||| | ||| ||||| Sbjct 6358 ACATCAGAAGTTGGGTAAGCGACACAGGTTAAGACATAGCCTTCTTCCATTTGGTCGTCG 6299 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 |||| ||| ||| || || || || || || | | ||||| || || || Sbjct 6298 TCCAAGAAGCTTTGGTCGGACTGGTCAACGAAGCCAGAGACGAGTTTACCGGCGCAGCTA 6239 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 || || | ||||| ||| || || ||||||| ||| | || ||||| ||||| ||||| Sbjct 6238 GAGCAAGAACCAGAACGGCATGAGTAAGGCAAATCGATTCCGGCTTCTTCAGCTGCGTCG 6179 Query 102992 AG 102993 || Sbjct 6178 AG 6177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631397442846240