Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020841.1 Length=40803 Score E Sequences producing significant alignments: (Bits) Value seq251147 159 9e-35 seq6041 145 2e-30 >seq251147 Length=238287 Score = 159 bits (176), Expect = 9e-35 Identities = 231/326 (71%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 5060 TCTAGCATTTGCATCTGCATAGCTTTAACCTCGGTCACGTAGCGGTCAGTTCCATCTTGC 5119 |||| ||||||||| ||| ||| || ||| || | || || || |||| | | Sbjct 219567 TCTAACATTTGCATTTGCTCAGCACGAATCTCTGTAATATAACGATCTTGACCATTTGGA 219508 Query 5120 GCTTGATATTTGCGAGTGCTTAATTTGCCCTCGATATAAACTTTTGAGCCTTTACGTAAA 5179 |||||||||| ||||| | || |||| |||||||| ||||| |||||||| ||| Sbjct 219507 TCTTGATATTTACGAGTACGCAAACTGCCTTCGATATAGACTTTACTACCTTTACGCAAA 219448 Query 5180 TACTGTGCTGCAATCTCACCAAGACGGTTAGCCAGCGAAACTTTATGCCATTCGGTAGCT 5239 |||||||| || || || || ||||| ||| || || | ||||||||| || ||| Sbjct 219447 TACTGTGCAGCGATTTCGCCCAGACGATTAAATAGTGAGATACGATGCCATTCTGTCGCT 219388 Query 5240 TCACGCTTTTCGCCTGATTGCTTATCAGTCCATTGCTCACTTGTTGCCACTGATATGTTG 5299 || | |||||||| |||||| || ||||||||||| || || || || || ||| Sbjct 219387 TCTCTTTTTTCGCCGCTTTGCTTGTCTGTCCATTGCTCTGACGTCGCAACCGAAATATTG 219328 Query 5300 GCAATGCTGCCACCGTTGCTGAATTGCTTTACTTCTGGATCAGCGCCCAATGTACCGATG 5359 | | ||| || || || || ||||| | | || ||||| || || | |||||||| Sbjct 219327 GTCACGCTACCGCCATTACTAAATTGACGTGCCTCAGGATCTGCTCCAAGGTTACCGATG 219268 Query 5360 ATGATTACTTTGTTTACGCCTCTCAT 5385 ||||| ||||| || || || | ||| Sbjct 219267 ATGATAACTTTATTAACTCCGCGCAT 219242 >seq6041 Length=422222 Score = 145 bits (160), Expect = 2e-30 Identities = 194/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 13040 GAGTTTAATTGTCCAGTTATCGCACTGTCACAGCTTAACCGTAGCTTAGAGAGCCGACCA 13099 ||| || | ||||| ||||| || || || |||||||||||||| |||| | ||| || Sbjct 190455 GAGCTTGAATGTCCCGTTATTGCCCTATCTCAGCTTAACCGTAGTCTAGAAAACCGTCCG 190396 Query 13100 AACAAACGGCCCATCATGAGCGACCTAAAAGAGTCAGGGGCCATTGAGGAAAACGCTGAC 13159 || ||||| || |||||| || || ||| || || || |||||| | | || || Sbjct 190395 AATAAACGCCCTATCATGTCGGATCTGCGAGAATCTGGTGCGATTGAGCAGGATGCCGAT 190336 Query 13160 GTGATTATGTTCCTGTACCGCGATGAGGTTTATAACGAAAACTCGGACCAAAAAGGTATT 13219 ||||||||||| | || || |||||||||||||| || ||||| ||||| ||||| | Sbjct 190335 TTGATTATGTTCATCTATCGTGATGAGGTTTATAATGAGAACTCCGACCACAAAGGGGTG 190276 Query 13220 GCTGAGGT-AGGAGTGGCTAAAAACCGTCAAGGGCCAGTTGGGACCGTAAGACTAGCGTT 13278 ||||| | | | ||| |||| | ||| | || || |||| ||||| |||| | || Sbjct 190275 GCTGAAATCATCATTGG-TAAACAGCGTAACGGCCCGATTGGTACCGTGCGACTGGGTTT 190217 Query 13279 TGAGGGTGAATACAGCCGCTTTAGCAA 13305 |||||| ||| || ||||| | ||| Sbjct 190216 TGAGGGGCAATTCACGCGCTTCATCAA 190190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130034045122040