Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq119666 127 2e-24
seq99228 118 1e-21
seq90345 116 4e-21
seq219302 114 2e-20
seq229172 111 2e-19
seq251147 104 3e-17
seq196866 104 3e-17
seq248505 96.9 4e-15
seq191921 87.8 2e-12
seq204151 82.4 9e-11
>seq119666
Length=8982
Score = 127 bits (140), Expect = 2e-24
Identities = 299/448 (67%), Gaps = 10/448 (2%)
Strand=Plus/Minus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
||||| ||||| ||| | || ||||||| || ||||||| |||||| |||
Sbjct 2478 GTGGAGTTTCTGAAGAAGCCTGAGAGATTCACTGCGGTTGGTGCCCGGATCCCGAAAGGT 2419
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| || || ||| || ||||| || || ||||| | || |||||| || |||
Sbjct 2418 GTTCTCCTTATTGGTCCTCCTGGTACTGGTAAAACCCTGTTGGCAAAAGCCATTGCTGGT 2359
Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414
||| | ||| || ||| | ||| ||| | | | |||||||||||||| || |
Sbjct 2358 GAAGCCGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTGGAGATGTTCGTCG 2301
Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474
|||| |||||| |||||| || ||||| || ||| ||| |||||| || || |
Sbjct 2300 GTGTTGGTGCCTCAAGGGTGCGTGATCTTTTCAAAAAAGCCAAGGAAAATGCGCCCTGCA 2241
Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531
|||| || ||||||| || ||||| || || | |||| | | | || ||||
Sbjct 2240 TTGTTTTTGTTGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 2184
Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591
|| ||||| || |||||||| || ||||||| || | || ||||||||||| ||||
Sbjct 2183 GAGGTAATGATGAAAGAGAACAGACTCTTAATCAGCTCTTGACTGAGATGGATGGTTTTG 2124
Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651
| | | ||||| || | || |||| || || || | | || || ||||| ||
Sbjct 2123 AGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCG 2064
Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679
| | || | || || |||||||| ||
Sbjct 2063 CTTTGCTGAGACCAGGACGTTTTGACCG 2036
>seq99228
Length=25189
Score = 118 bits (130), Expect = 1e-21
Identities = 297/448 (66%), Gaps = 10/448 (2%)
Strand=Plus/Plus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
||||| ||||| ||| | || ||||| | || ||||||| |||||| |||
Sbjct 21087 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGTGCCCGGATCCCAAAAGGT 21146
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| || || | ||| || ||||| || || ||| | | || ||| || || |||
Sbjct 21147 GTTCTCCTTGTTGGTCCTCCTGGTACTGGTAAAACCTTATTGGCAAAAGCTATTGCTGGT 21206
Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414
||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| |
Sbjct 21207 GAAGCTGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 21264
Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474
|||| |||||| |||||| || ||||| || ||| ||| |||||| || || |
Sbjct 21265 GTGTTGGTGCCTCAAGGGTGCGTGATCTTTTCAAAAAGGCCAAGGAAAATGCTCCCTGCA 21324
Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531
|||| || ||||||| || ||||| || || | |||| | | | || ||||
Sbjct 21325 TTGTTTTTGTTGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 21381
Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591
|| ||||| || |||||||| || ||||||| || || || ||||||||||| ||||
Sbjct 21382 GAGGTAATGATGAAAGAGAACAGACTCTTAATCAGCTCCTTACTGAGATGGATGGTTTTG 21441
Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651
| | | ||||| || | || |||| || || || | | || || ||||| |
Sbjct 21442 AGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCTG 21501
Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679
| | || | || || |||||||| ||
Sbjct 21502 CTTTGCTGAGACCAGGACGTTTTGACCG 21529
>seq90345
Length=8683
Score = 116 bits (128), Expect = 4e-21
Identities = 196/281 (70%), Gaps = 12/281 (4%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || ||||| ||||| || | || |||| | || || ||| || || || |||
Sbjct 4676 CCGGGGACGGGGAAGACTCTTTTGGCTAGAGCTGTGGCTGGAGAAGCAGGAGTGCCTTTC 4735
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||| |||| | | || |||||| | || || ||||| ||||| ||||||
Sbjct 4736 TTCTCTTGCGCTGCGTCGGAGTTCGTGGAGCTTTTCGTCGGTGTTGGTGCTTCTAGGGTT 4795
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490
| ||| | ||||| | || |||| ||| || ||||||||||||||||||||
Sbjct 4796 AGGGATTTGTTTGACAAGGC----GAAATCCAATGCACCTTGTATTGTCTTCATTGATGA 4851
Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548
||||||||| || || | ||| | | ||||| ||| | | | |||||| ||||||
Sbjct 4852 GATTGATGCTGTTGGTAGGCAGAGAGGAGCTGGTATGGGAGG--TGGAAATGATGAGAGA 4909
Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589
||||| || || ||||| || | || ||||||||||| ||
Sbjct 4910 GAACAGACGATCAATCAGCTCTTGACTGAGATGGATGGTTT 4950
>seq219302
Length=13899
Score = 114 bits (126), Expect = 2e-20
Identities = 160/223 (72%), Gaps = 5/223 (2%)
Strand=Plus/Minus
Query 177744 AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGAT 177803
|||||||||| | || ||||||| ||||||| | || || || |||||||| || ||
Sbjct 9150 AGTAATCTTCCTGGTCACAAAGTTCTCACCTCGACGAGGCGACTCATGGTTGAAAAGAAT 9091
Query 177804 TCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGC 177863
|||| |||||| |||| ||| |||| ||||| ||| || | | ||||||||||||
Sbjct 9090 TCCGTTGCAGGCGTACAGACCGTAGGCTTCTCTGTAGTTGACGGTGTACCAGTGAGCGGC 9031
Query 177864 CAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGT 177923
| |||||| | ||||| |||| |||| |||||||| ||||| || ||||
Sbjct 9030 GACTTTGGACGCTGCATAGGGAGATCTGGGGTGAAAGGGTGTGGTCTCAGACTGCGGAG- 8972
Query 177924 TTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965
||| || | ||||||||||| |||| | || |||||
Sbjct 8971 ---GAGGAGTTGAGCCAAACATCTCGGAAGATCCAGCCTGGTA 8932
>seq229172
Length=5357
Score = 111 bits (122), Expect = 2e-19
Identities = 195/280 (70%), Gaps = 8/280 (3%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || ||||| ||||| || | || |||| | || || || || || || |||
Sbjct 5077 CCGGGAACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCCGGAGAGGCAGGAGTGCCTTTC 5018
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||| |||| | | || |||||| | || || ||||| ||||| || |||
Sbjct 5017 TTCTCTTGCGCTGCGTCTGAGTTCGTGGAGCTTTTCGTCGGTGTTGGTGCTTCTAGAGTT 4958
Query 175435 CGCGATCTCTTTGAAATCGCCCG--CGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492
| ||| | ||||| | || ||||| ||| |||||||| |||||||||||||
Sbjct 4957 AGGGATTTGTTTGAGAAGGCGAAATCGAAAGC--ACCTTGTATTGTTTTCATTGATGAGA 4900
Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550
||||||| || || | ||| | ||||||| ||| | | | |||||| ||||||||
Sbjct 4899 TTGATGCTGTTGGTAGGCAGAGAGGCGCTGGTATGGGAGG--TGGAAATGATGAGAGAGA 4842
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
||| || |||||||| || | || ||||||||||| |||
Sbjct 4841 ACAGACCATTAATCAGCTCTTGACTGAGATGGATGGGTTT 4802
>seq251147
Length=238287
Score = 104 bits (114), Expect = 3e-17
Identities = 259/388 (67%), Gaps = 4/388 (1%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|||||||| || || || || | ||| ||||||| || |||||| | || || || |||
Sbjct 146289 CCAGGTACTGGTAAAACGCTATTGGCCAGAGCCATTGCTGGTGAAGCCAAAGTACCGTTC 146348
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
| | || | | | || || || |||||||||||||||||||| | | ||
Sbjct 146349 TTTTCGATTTCAGGTTCTGATTTCGTAGAAATGTTTGTTGGTGTGGGTGCTTCACGTGTA 146408
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494
|| ||| | |||||| || ||| | ||| |||||| ||||||| |||||||||
Sbjct 146409 CGTGATATGTTTGAACAGGCGAAGAAAAGTGCACCTTGTATTATCTTCATCGATGAGATT 146468
Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGC-CAGCAAATGACGAGAGAGAACA 175553
||||| || || || || | |||| | || | ||||| ||| | || ||
Sbjct 146469 GATGCAGTTGGTCGTCATCGTGGTTCTGG-AACAGGCGGTGGTAATGATGAGCGTGAGCA 146527
Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGT 175613
||| | || || || | |||||||| || ||||| | | ||| || | |
Sbjct 146528 AACTCTAAACCAGTTATTGGTTGAGATGGACGGTTTTGAAGGTAACGAAGGCGTTATTAT 146587
Query 175614 TATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTT 175673
||||| || || || || | || | |||||| | || || | ||||| ||||||||
Sbjct 146588 CATTGCTGCGACCAACCGTGCAGACGTACTTGATAAAGCGCTATTACGCCCAGGTCGTTT 146647
Query 175674 TGATCG-CAAGATCCAAGTGGGTCTTCC 175700
||||| |||| | |||||||| || ||
Sbjct 146648 CGATCGTCAAG-TACAAGTGGGGCTGCC 146674
>seq196866
Length=5497
Score = 104 bits (114), Expect = 3e-17
Identities = 157/222 (71%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 177745 GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATT 177804
|| |||||| | || || |||| ||||||| | ||||| ||||||||||| ||||||
Sbjct 2045 GTTATCTTCCTCGTCACGAAGTTCTCACCTCGCCGAGGTGACTCGTGGTTGAACAGGATT 1986
Query 177805 CCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCC 177864
||| |||||| |||| ||||||| ||||| ||| || | | ||||||||| ||
Sbjct 1985 CCGTTGCAGGCGTACAAGCCATAGGCTTCTCTGTAGTTGACGGTGTACCAGTGAGCCGCG 1926
Query 177865 AATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTT 177924
| |||||| | ||||| |||| |||| || || || ||||| || ||||
Sbjct 1925 ACTTTGGACGCAGCATAGGGAGATCTGGGGTGAAACGGAGTGGTCTCAGACTGCGGAG-- 1868
Query 177925 TCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965
||| || | || |||||||| |||| | ||| |||||
Sbjct 1867 --GAGGAGTTGACCCGAACATCTCGGAAGATCCGGCCTGGTA 1828
>seq248505
Length=7796
Score = 96.9 bits (106), Expect = 4e-15
Identities = 198/291 (68%), Gaps = 10/291 (3%)
Strand=Plus/Minus
Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453
|||| || ||||||||||| ||||| ||||| | | || || || | ||||||| |
Sbjct 5056 ACTTCGTTGAGATGTTTGTCGGTGTCGGTGCATCACGTGTACGTGACTTGTTTGAAAATG 4997
Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513
| |||| |||||||| ||||||| ||||||||||||||||| || ||||
Sbjct 4996 CGAAGAAAAACGCCCCATGTATCATCTTCATCGATGAGATTGATGCGGTTGGTCGTCAAC 4937
Query 175514 GCAGCGCTGGTGGTATGCCAGC--AAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571
| | || ||| || | || | |||| ||| | ||||||||| | || ||||| ||
Sbjct 4936 GTGGAGCCGGT--CTTGGCGGCGGACATGATGAGCGCGAACAAACATTGAACCAACTTCT 4879
Query 175572 CACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628
||||||||||| || ||| || || || || | | || || || || ||
Sbjct 4878 TGTTGAGATGGATGGATTCAGTGAAAACGA---AGGTATCATCATGATCGCAGCAACAAA 4822
Query 175629 TCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679
|| | ||||||| | || || | || || || ||||||||||| ||
Sbjct 4821 CCGTGCGGATATCTTGGACCCGGCTTTACTCCGTCCAGGTCGTTTTGACCG 4771
>seq191921
Length=6033
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 76129 TGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCG 76188
|||||||| ||||| ||| | || || |||| ||||| || ||||||||
Sbjct 2934 TGTTACCATCAATCTCAACAAGATTATAGATGTGAATTACTATCCTGTGGAGACTGCAAA 2875
Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248
|| ||| || |||||||| |||||||||||| | ||||| |||||||| || |||| |||
Sbjct 2874 AACGTCAAACATGCGACATAGACCTATTGGTATTGGTGTGCAAGGTCTTGCAGATGCATT 2815
Query 76249 TAT 76251
|||
Sbjct 2814 TAT 2812
>seq204151
Length=272
Score = 82.4 bits (90), Expect = 9e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| ||||| || || ||||| | || ||| || || |||||| | ||| || |||
Sbjct 43 CCTGGTACCGGGAAAACCCTTTTGGCAAAAGCTATTGCTGGTGAAGCTGGTGTGCCTTTC 102
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||||| | | ||||| ||||||||||| ||||| |||||| ||| ||
Sbjct 103 TTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCCTCAAGAGTC 162
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494
|||||||| || | | ||| ||||| || || |||||||| | ||||| |||
Sbjct 163 CGCGATCTTTTCAAGAAAGCCAAGGAAAACGCTCCCTGCATTGTCTTTGTAGATGAAATT 222
Query 175495 GATGCGGTGGGCAAGCAA 175512
||||| || || | ||||
Sbjct 223 GATGCTGTTGGTAGGCAA 240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594576848736640
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