Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq119666 127 2e-24 seq99228 118 1e-21 seq90345 116 4e-21 seq219302 114 2e-20 seq229172 111 2e-19 seq251147 104 3e-17 seq196866 104 3e-17 seq248505 96.9 4e-15 seq191921 87.8 2e-12 seq204151 82.4 9e-11 >seq119666 Length=8982 Score = 127 bits (140), Expect = 2e-24 Identities = 299/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||||| || ||||||| |||||| ||| Sbjct 2478 GTGGAGTTTCTGAAGAAGCCTGAGAGATTCACTGCGGTTGGTGCCCGGATCCCGAAAGGT 2419 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || |||||| || ||| Sbjct 2418 GTTCTCCTTATTGGTCCTCCTGGTACTGGTAAAACCCTGTTGGCAAAAGCCATTGCTGGT 2359 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | |||||||||||||| || | Sbjct 2358 GAAGCCGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTGGAGATGTTCGTCG 2301 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| |||||| || ||||| || ||| ||| |||||| || || | Sbjct 2300 GTGTTGGTGCCTCAAGGGTGCGTGATCTTTTCAAAAAAGCCAAGGAAAATGCGCCCTGCA 2241 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| || ||||||| || ||||| || || | |||| | | | || |||| Sbjct 2240 TTGTTTTTGTTGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 2184 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || | || ||||||||||| |||| Sbjct 2183 GAGGTAATGATGAAAGAGAACAGACTCTTAATCAGCTCTTGACTGAGATGGATGGTTTTG 2124 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| || | || |||| || || || | | || || ||||| || Sbjct 2123 AGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCG 2064 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | | || | || || |||||||| || Sbjct 2063 CTTTGCTGAGACCAGGACGTTTTGACCG 2036 >seq99228 Length=25189 Score = 118 bits (130), Expect = 1e-21 Identities = 297/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || ||||||| |||||| ||| Sbjct 21087 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGTGCCCGGATCCCAAAAGGT 21146 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || ||||| || || ||| | | || ||| || || ||| Sbjct 21147 GTTCTCCTTGTTGGTCCTCCTGGTACTGGTAAAACCTTATTGGCAAAAGCTATTGCTGGT 21206 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||| | | | ||||| ||||||||||| | Sbjct 21207 GAAGCTGGTGTACCCTTCTTTTCCAT--CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCG 21264 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| |||||| || ||||| || ||| ||| |||||| || || | Sbjct 21265 GTGTTGGTGCCTCAAGGGTGCGTGATCTTTTCAAAAAGGCCAAGGAAAATGCTCCCTGCA 21324 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| || ||||||| || ||||| || || | |||| | | | || |||| Sbjct 21325 TTGTTTTTGTTGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 21381 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| || || || ||||||||||| |||| Sbjct 21382 GAGGTAATGATGAAAGAGAACAGACTCTTAATCAGCTCCTTACTGAGATGGATGGTTTTG 21441 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| || | || |||| || || || | | || || ||||| | Sbjct 21442 AGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCTG 21501 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | | || | || || |||||||| || Sbjct 21502 CTTTGCTGAGACCAGGACGTTTTGACCG 21529 >seq90345 Length=8683 Score = 116 bits (128), Expect = 4e-21 Identities = 196/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || ||||| ||||| || | || |||| | || || ||| || || || ||| Sbjct 4676 CCGGGGACGGGGAAGACTCTTTTGGCTAGAGCTGTGGCTGGAGAAGCAGGAGTGCCTTTC 4735 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | || |||||| | || || ||||| ||||| |||||| Sbjct 4736 TTCTCTTGCGCTGCGTCGGAGTTCGTGGAGCTTTTCGTCGGTGTTGGTGCTTCTAGGGTT 4795 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | ||| | ||||| | || |||| ||| || |||||||||||||||||||| Sbjct 4796 AGGGATTTGTTTGACAAGGC----GAAATCCAATGCACCTTGTATTGTCTTCATTGATGA 4851 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 ||||||||| || || | ||| | | ||||| ||| | | | |||||| |||||| Sbjct 4852 GATTGATGCTGTTGGTAGGCAGAGAGGAGCTGGTATGGGAGG--TGGAAATGATGAGAGA 4909 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 ||||| || || ||||| || | || ||||||||||| || Sbjct 4910 GAACAGACGATCAATCAGCTCTTGACTGAGATGGATGGTTT 4950 >seq219302 Length=13899 Score = 114 bits (126), Expect = 2e-20 Identities = 160/223 (72%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 177744 AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGAT 177803 |||||||||| | || ||||||| ||||||| | || || || |||||||| || || Sbjct 9150 AGTAATCTTCCTGGTCACAAAGTTCTCACCTCGACGAGGCGACTCATGGTTGAAAAGAAT 9091 Query 177804 TCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGC 177863 |||| |||||| |||| ||| |||| ||||| ||| || | | |||||||||||| Sbjct 9090 TCCGTTGCAGGCGTACAGACCGTAGGCTTCTCTGTAGTTGACGGTGTACCAGTGAGCGGC 9031 Query 177864 CAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGT 177923 | |||||| | ||||| |||| |||| |||||||| ||||| || |||| Sbjct 9030 GACTTTGGACGCTGCATAGGGAGATCTGGGGTGAAAGGGTGTGGTCTCAGACTGCGGAG- 8972 Query 177924 TTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||| || | ||||||||||| |||| | || ||||| Sbjct 8971 ---GAGGAGTTGAGCCAAACATCTCGGAAGATCCAGCCTGGTA 8932 >seq229172 Length=5357 Score = 111 bits (122), Expect = 2e-19 Identities = 195/280 (70%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || ||||| ||||| || | || |||| | || || || || || || ||| Sbjct 5077 CCGGGAACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCCGGAGAGGCAGGAGTGCCTTTC 5018 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | || |||||| | || || ||||| ||||| || ||| Sbjct 5017 TTCTCTTGCGCTGCGTCTGAGTTCGTGGAGCTTTTCGTCGGTGTTGGTGCTTCTAGAGTT 4958 Query 175435 CGCGATCTCTTTGAAATCGCCCG--CGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | ||||| | || ||||| ||| |||||||| ||||||||||||| Sbjct 4957 AGGGATTTGTTTGAGAAGGCGAAATCGAAAGC--ACCTTGTATTGTTTTCATTGATGAGA 4900 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| || || | ||| | ||||||| ||| | | | |||||| |||||||| Sbjct 4899 TTGATGCTGTTGGTAGGCAGAGAGGCGCTGGTATGGGAGG--TGGAAATGATGAGAGAGA 4842 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || |||||||| || | || ||||||||||| ||| Sbjct 4841 ACAGACCATTAATCAGCTCTTGACTGAGATGGATGGGTTT 4802 >seq251147 Length=238287 Score = 104 bits (114), Expect = 3e-17 Identities = 259/388 (67%), Gaps = 4/388 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || || || || | ||| ||||||| || |||||| | || || || ||| Sbjct 146289 CCAGGTACTGGTAAAACGCTATTGGCCAGAGCCATTGCTGGTGAAGCCAAAGTACCGTTC 146348 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | | || | | | || || || |||||||||||||||||||| | | || Sbjct 146349 TTTTCGATTTCAGGTTCTGATTTCGTAGAAATGTTTGTTGGTGTGGGTGCTTCACGTGTA 146408 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||| | |||||| || ||| | ||| |||||| ||||||| ||||||||| Sbjct 146409 CGTGATATGTTTGAACAGGCGAAGAAAAGTGCACCTTGTATTATCTTCATCGATGAGATT 146468 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGC-CAGCAAATGACGAGAGAGAACA 175553 ||||| || || || || | |||| | || | ||||| ||| | || || Sbjct 146469 GATGCAGTTGGTCGTCATCGTGGTTCTGG-AACAGGCGGTGGTAATGATGAGCGTGAGCA 146527 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGT 175613 ||| | || || || | |||||||| || ||||| | | ||| || | | Sbjct 146528 AACTCTAAACCAGTTATTGGTTGAGATGGACGGTTTTGAAGGTAACGAAGGCGTTATTAT 146587 Query 175614 TATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTT 175673 ||||| || || || || | || | |||||| | || || | ||||| |||||||| Sbjct 146588 CATTGCTGCGACCAACCGTGCAGACGTACTTGATAAAGCGCTATTACGCCCAGGTCGTTT 146647 Query 175674 TGATCG-CAAGATCCAAGTGGGTCTTCC 175700 ||||| |||| | |||||||| || || Sbjct 146648 CGATCGTCAAG-TACAAGTGGGGCTGCC 146674 >seq196866 Length=5497 Score = 104 bits (114), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 177745 GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATT 177804 || |||||| | || || |||| ||||||| | ||||| ||||||||||| |||||| Sbjct 2045 GTTATCTTCCTCGTCACGAAGTTCTCACCTCGCCGAGGTGACTCGTGGTTGAACAGGATT 1986 Query 177805 CCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCC 177864 ||| |||||| |||| ||||||| ||||| ||| || | | ||||||||| || Sbjct 1985 CCGTTGCAGGCGTACAAGCCATAGGCTTCTCTGTAGTTGACGGTGTACCAGTGAGCCGCG 1926 Query 177865 AATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTT 177924 | |||||| | ||||| |||| |||| || || || ||||| || |||| Sbjct 1925 ACTTTGGACGCAGCATAGGGAGATCTGGGGTGAAACGGAGTGGTCTCAGACTGCGGAG-- 1868 Query 177925 TCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||| || | || |||||||| |||| | ||| ||||| Sbjct 1867 --GAGGAGTTGACCCGAACATCTCGGAAGATCCGGCCTGGTA 1828 >seq248505 Length=7796 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/291 (68%), Gaps = 10/291 (3%) Strand=Plus/Minus Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 |||| || ||||||||||| ||||| ||||| | | || || || | ||||||| | Sbjct 5056 ACTTCGTTGAGATGTTTGTCGGTGTCGGTGCATCACGTGTACGTGACTTGTTTGAAAATG 4997 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 | |||| |||||||| ||||||| ||||||||||||||||| || |||| Sbjct 4996 CGAAGAAAAACGCCCCATGTATCATCTTCATCGATGAGATTGATGCGGTTGGTCGTCAAC 4937 Query 175514 GCAGCGCTGGTGGTATGCCAGC--AAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | | || ||| || | || | |||| ||| | ||||||||| | || ||||| || Sbjct 4936 GTGGAGCCGGT--CTTGGCGGCGGACATGATGAGCGCGAACAAACATTGAACCAACTTCT 4879 Query 175572 CACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 ||||||||||| || ||| || || || || | | || || || || || Sbjct 4878 TGTTGAGATGGATGGATTCAGTGAAAACGA---AGGTATCATCATGATCGCAGCAACAAA 4822 Query 175629 TCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 || | ||||||| | || || | || || || ||||||||||| || Sbjct 4821 CCGTGCGGATATCTTGGACCCGGCTTTACTCCGTCCAGGTCGTTTTGACCG 4771 >seq191921 Length=6033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 76129 TGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCG 76188 |||||||| ||||| ||| | || || |||| ||||| || |||||||| Sbjct 2934 TGTTACCATCAATCTCAACAAGATTATAGATGTGAATTACTATCCTGTGGAGACTGCAAA 2875 Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 || ||| || |||||||| |||||||||||| | ||||| |||||||| || |||| ||| Sbjct 2874 AACGTCAAACATGCGACATAGACCTATTGGTATTGGTGTGCAAGGTCTTGCAGATGCATT 2815 Query 76249 TAT 76251 ||| Sbjct 2814 TAT 2812 >seq204151 Length=272 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || || ||||| | || ||| || || |||||| | ||| || ||| Sbjct 43 CCTGGTACCGGGAAAACCCTTTTGGCAAAAGCTATTGCTGGTGAAGCTGGTGTGCCTTTC 102 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||||| | | ||||| ||||||||||| ||||| |||||| ||| || Sbjct 103 TTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCCTCAAGAGTC 162 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 |||||||| || | | ||| ||||| || || |||||||| | ||||| ||| Sbjct 163 CGCGATCTTTTCAAGAAAGCCAAGGAAAACGCTCCCTGCATTGTCTTTGTAGATGAAATT 222 Query 175495 GATGCGGTGGGCAAGCAA 175512 ||||| || || | |||| Sbjct 223 GATGCTGTTGGTAGGCAA 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594576848736640