Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 513 2e-140
seq218717 114 2e-20
>seq28607
Length=83266
Score = 513 bits (568), Expect = 2e-140
Identities = 696/966 (72%), Gaps = 6/966 (1%)
Strand=Plus/Plus
Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937
|| |||| ||| |||| ||||| ||||||||||| ||||| | |||||||||||||||
Sbjct 507 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 566
Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995
|||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | |
Sbjct 567 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 624
Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055
|||||| ||||||||||| || || || || || ||||| || ||||| |||| ||||
Sbjct 625 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATA 684
Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115
|| | || ||| ||||||| || ||| || || | | || | |||||| || | |
Sbjct 685 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 744
Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174
| | ||||| |||| | ||||| |||||||| |||| ||||| || |||||||||||
Sbjct 745 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGC 803
Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234
||||| || || || ||||||||||| || || || ||||| | || ||| || |
Sbjct 804 TACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATT 863
Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294
||| || || || ||||| | | ||| || || || ||||| ||||||||||| || ||
Sbjct 864 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 923
Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354
|| || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| ||
Sbjct 924 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 983
Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414
||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| |||||
Sbjct 984 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 1043
Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474
||| || || ||||||| ||| || | ||||| || || ||||| | || ||
Sbjct 1044 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGG 1103
Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534
||| |||||| ||| ||||| || | |||||| | ||| | | |||||||
Sbjct 1104 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1163
Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594
| |||||| ||| || | |||| | ||||| | | || | | ||| |||||
Sbjct 1164 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1223
Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654
||||| || | ||| ||||| | | ||||||||||| || || || || || || ||
Sbjct 1224 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACC 1283
Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714
|||||| |||| |||| | ||||| || || || |||||||| || | | ||
Sbjct 1284 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1343
Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774
|| | |||||||||||||||||| || ||||| || || ||||||||||| ||||| |
Sbjct 1344 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1403
Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834
||||| | || || | || ||| ||| ||||| | ||| |||||||| || |
Sbjct 1404 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1463
Query 8835 ATAAAG 8840
|||||
Sbjct 1464 GTAAAG 1469
>seq218717
Length=448
Score = 114 bits (126), Expect = 2e-20
Identities = 136/183 (74%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 8329 TGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTA 8388
|| || || |||||||||||||| ||||| || |||||||| | || ||||| || |||
Sbjct 8 TGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGTA 67
Query 8389 CCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAG 8448
| ||| || ||||||||||| |||| | | || || ||||||| |||||| | |||
Sbjct 68 CAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAAG 127
Query 8449 AACACTGCGAAAGCAGCAG-ATACTGGAGCACTATATGCTACACAGATCCATGGTCTCAT 8507
|| || | | |||||| | | || ||||| |||||| ||| ||||| || | |||
Sbjct 128 AAAACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCAT 187
Query 8508 ACC 8510
|||
Sbjct 188 ACC 190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613805204032160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |