Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 643 1e-179
seq218717 140 4e-28
seq135351 95.1 1e-14
seq89940 95.1 1e-14
>seq28607
Length=83266
Score = 643 bits (712), Expect = 1e-179
Identities = 739/994 (74%), Gaps = 0/994 (0%)
Strand=Plus/Minus
Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827
|||||| | ||| | |||||||| | || ||||| || | || ||||||||| |
Sbjct 1503 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 1444
Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887
|||||| || || | ||| | |||||| | || || |||| ||||| ||||||||
Sbjct 1443 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384
Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947
|| || || || || || || |||||||| || |||| ||||| | || || |||||
Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1324
Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007
|| || || ||||| || |||| |||| || |||||| | || || || || ||
Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 1264
Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067
||||||||| ||||| |||| |||||||| || ||||| ||||||| |||| ||||
Sbjct 1263 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1204
Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127
| ||||| | |||| | | || |||||||||||||||||||| || |||
Sbjct 1203 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1144
Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187
||| ||||||||||| ||||| |||||| || ||||| || || || ||||| | |||
Sbjct 1143 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1084
Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247
|| ||| | | || || | |||||||| ||||| ||||||| ||||| || |||||
Sbjct 1083 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1024
Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307
||| || || ||||||| ||| | || ||||| ||||||||||| ||||| ||||| ||
Sbjct 1023 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 964
Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367
|| || ||| | || || ||||| ||||| || ||| | |||||||||||||| ||
Sbjct 963 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 904
Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427
||||| |||||| | | | || || || || |||| ||||| || | ||
Sbjct 903 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 844
Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487
|||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| || ||
Sbjct 843 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 784
Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547
|| |||||||||||||| ||| |||||||| || || || || || |||||| | ||
Sbjct 783 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 724
Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607
|| ||||| || || || || ||||| || || | || | ||| ||||| |||||
Sbjct 723 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 664
Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667
||| || |||||||| |||||||| || | ||||| |||| || ||||| | || ||
Sbjct 663 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 604
Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727
||||| ||| || ||||||| ||| || |||||||||||||||||||| ||||| ||
Sbjct 603 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 544
Query 166728 ACACAACTTCCCCCTCGACCTCGCTGCTGCTGAG 166761
||||||||||| || ||||| ||||||| ||||
Sbjct 543 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
Score = 535 bits (592), Expect = 5e-147
Identities = 731/1019 (72%), Gaps = 4/1019 (0%)
Strand=Plus/Plus
Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073
|||||| | | ||||||||| | ||||| || || |||||||| || ||||||||
Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463
Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133
|| | || ||||| ||| ||| | ||| | || |||||| | || || || || ||
Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523
Query 167134 GTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTC 167191
|| || ||||||||||||||| | || || | ||| | || ||| || |||
Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCC--TATTTAGAAGGTTGCAATTTTT 32581
Query 167192 TTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGG 167251
| || || || ||| ||||| || || | | | |||||||| | | || ||||
Sbjct 32582 TAACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGG 32641
Query 167252 GTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTG 167311
|||||||| | ||||| ||||| | ||| ||| | || || || ||||||||||
Sbjct 32642 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTG 32701
Query 167312 TGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTC 167371
| || |||||||| || || || | || ||||| ||| | || || |||||||||||||
Sbjct 32702 TTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTC 32761
Query 167372 GCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 167431
| || | || || || ||||| || || ||||||||||| |||||||| || |
Sbjct 32762 GATCCGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 32821
Query 167432 TTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCG 167491
|| || ||||| | ||||| || |||||| | ||||||||||| || || |
Sbjct 32822 TTTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 32881
Query 167492 GAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGA 167551
| || || || || || |||||| ||||||| ||||||| || || || |||||| |||
Sbjct 32882 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 32941
Query 167552 ATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCC 167611
| ||||||||||||||||| || || ||| | ||||| | || |||| | || || |
Sbjct 32942 ACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTC 33001
Query 167612 ATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGG 167671
|||||| ||| ||||| |||||||| | |||||||||||| ||||| || || |
Sbjct 33002 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 33061
Query 167672 CATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGT 167731
| || | | ||||| | ||||| |||||||||||||| || || ||||| || ||||
Sbjct 33062 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 33121
Query 167732 CTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCG 167791
| || ||||| || ||||||| ||| ||||| ||| | ||||||||||||||||| |
Sbjct 33122 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 33181
Query 167792 TTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTC 167851
| || || | || | |||| | |||| | | || || ||| | || || |
Sbjct 33182 TACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTAC 33241
Query 167852 GTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTT 167911
|||| || || |||||||| || || ||| | || ||||| ||||| || ||||| ||||
Sbjct 33242 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 33301
Query 167912 TCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATC 167971
||||||||||||| || ||| | || |||||| |||| || ||| | || || ||||
Sbjct 33302 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 33361
Query 167972 AACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030
| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| || |||
Sbjct 33362 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 33420
>seq218717
Length=448
Score = 140 bits (154), Expect = 4e-28
Identities = 163/219 (74%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 166096 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 166155
|| ||| |||||||||||||||| || |||| ||||||||||| ||||| ||||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 166156 GCTTACTCAGCACCAGTC-GCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCA 166214
|| || ||||| || || || ||||| | || || ||| | | ||||| | |||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107
Query 166215 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGT 166274
||| ||||| | | ||| ||||| || |||||||| | || ||||||| || | ||
Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47
Query 166275 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCA 166313
||||| ||||||||||| ||||| ||||| || || ||
Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8
>seq135351
Length=41855
Score = 95.1 bits (104), Expect = 1e-14
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||
Sbjct 2135 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 2194
Query 18179 GGTTCAAATCCTACCTGGGGAG--TTGTT 18205
||||| |||||||| ||||||| |||||
Sbjct 2195 GGTTCGAATCCTACTTGGGGAGATTTGTT 2223
>seq89940
Length=26391
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| |||||||||||
Sbjct 1402 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 1461
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
||||| |||||||| |||||||
Sbjct 1462 GGTTCGAATCCTACTTGGGGAG 1483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559373235243200
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