Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq28607 538 1e-148 seq218717 138 3e-28 >seq28607 Length=83266 Score = 538 bits (596), Expect = 1e-148 Identities = 718/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | || |||||||| | |||||||| || || | Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || | |||||||||||| || ||| || || Sbjct 1442 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | || || ||||| Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1324 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || ||||| ||| | |||| | | || || || | || || ||||| || Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 1264 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 ||||||||||| | ||||||||||||| |||||||||||||| | |||| | || Sbjct 1263 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1204 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | ||||| | |||| || | ||| ||||| || |||||||||||||| | || Sbjct 1203 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1144 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 1143 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1084 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 ||| ||| | | || || |||| || || ||||||||||| |||||| | || || Sbjct 1083 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1024 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||||| ||| | || ||||||||||||||||| ||||||||||| || Sbjct 1023 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 964 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||||||| | ||||| || || ||||| || || | || ||||||||| || Sbjct 963 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 904 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | | |||| || || | || | || || || ||| | | || || | || Sbjct 903 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 844 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 |||||| || || ||||| ||||| |||||||| ||||| |||||||| || |||||||| Sbjct 843 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 784 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | ||||||||||||||||| || || ||||| ||| | | |||||||| | || Sbjct 783 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 724 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 || ||||| || ||||||||||||||| |||| | || | |||||||||||||| Sbjct 723 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 664 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 | | ||||||||||| || |||||||| | | | | | | |||| || || || || Sbjct 663 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 604 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| ||| |||||||||| |||||||| | || || |||||||| || || || Sbjct 603 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 544 Query 42193 ACACAACTTCCCGCTTGACCTTGCATCCGTGGAGG 42227 ||||||||||| || ||||| || | || |||| Sbjct 543 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 509 >seq218717 Length=448 Score = 138 bits (152), Expect = 3e-28 Identities = 164/221 (74%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||| ||| | || |||||||||||||| | | || || ||| | || ||||| |||| Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGT 168 Query 41620 TGCGTACTCTGCTCCTGTC-GCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGAC 41678 ||| || || |||||||| || ||||| | || ||| ||| | ||||||| |||| | Sbjct 167 TGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTC 108 Query 41679 AGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGG 41738 | || ||||| | ||| |||||| | || || || | || ||||||| || | | Sbjct 107 AAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTG 48 Query 41739 TGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCAC 41779 | ||||||||||||||||| ||||||||||| || |||||| Sbjct 47 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145750413092512