Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 581 9e-162
seq218717 114 4e-21
>seq28607
Length=83266
Score = 581 bits (644), Expect = 9e-162
Identities = 735/1005 (73%), Gaps = 4/1005 (0%)
Strand=Plus/Minus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339
|||| || || ||||||||| | || ||| | || |||||||| |||| ||||||
Sbjct 1511 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTT 1452
Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398
||||| ||||||| |||| || | | | || || || ||||||| |||| |||||
Sbjct 1451 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCAT 1393
Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458
|||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 1392 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 1333
Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518
|| ||||| || || || |||||| | | |||| | || ||||| | |||||
Sbjct 1332 CGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTT 1273
Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578
|| ||||||||||||| || |||| |||||||| ||||| ||||| |||||| |
Sbjct 1272 TTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGA 1213
Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638
|| | || | ||||| | | ||| | | ||| |||| || || ||||||||
Sbjct 1212 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1153
Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698
| | ||| || || ||| | || ||||| |||||| || || || ||||| || ||
Sbjct 1152 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 1093
Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758
|| ||||| || ||| | |||| ||| |||| ||||| |||||| ||||| |||||
Sbjct 1092 TGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCC 1033
Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818
||| || || || ||||| |||||||| ||| | || ||||||||||| || ||||||||
Sbjct 1032 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 973
Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878
|||||| || || || ||| | ||||| || || ||||| || || || | || ||
Sbjct 972 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGC 913
Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938
|||||||||| | || || ||| | | | | ||||| || ||||| |||
Sbjct 912 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 853
Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998
||| | || ||||| ||||| ||||| || || ||||| |||||||| || || |||||
Sbjct 852 TAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGG 793
Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057
||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || |
Sbjct 792 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 734
Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117
|||| | || |||||||| || || || |||||||| ||| || | || | || || |
Sbjct 733 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCA 674
Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177
|||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | ||
Sbjct 673 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 614
Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237
| || |||||||||||||||| | || ||||| |||||||| | || || ||||| |
Sbjct 613 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 554
Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282
| || ||||| || |||||||| || || || || | || ||||
Sbjct 553 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 509
>seq218717
Length=448
Score = 114 bits (126), Expect = 4e-21
Identities = 152/210 (72%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 42625 CGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCT 42684
|| || ||||||||| | | || || ||| | || ||||| ||||||| || ||
Sbjct 217 CGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATATTCA 158
Query 42685 GCCCCTGTG-GCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTT 42743
|| ||||| || || || | || || ||| | | |||||| |||| ||||| |||
Sbjct 157 GCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCAAGGAAGTTT 98
Query 42744 TTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGC 42803
|| |||| |||||||| || || || |||| |||||||| || | || ||||||||
Sbjct 97 TTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGTATTCCAGGC 38
Query 42804 TGAACATAACATTCTTATGCATCCTTTCCA 42833
||| || |||||||||||||| || || ||
Sbjct 37 TGAGCACAACATTCTTATGCACCCATTTCA 8
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143077322700944
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