Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq28607 581 9e-162 seq218717 114 4e-21 >seq28607 Length=83266 Score = 581 bits (644), Expect = 9e-162 Identities = 735/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | || |||||||| |||| |||||| Sbjct 1511 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTT 1452 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | || || || ||||||| |||| ||||| Sbjct 1451 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCAT 1393 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 1392 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 1333 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || ||||| | ||||| Sbjct 1332 CGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTT 1273 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || ||||||||||||| || |||| |||||||| ||||| ||||| |||||| | Sbjct 1272 TTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGA 1213 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | ||||| | | ||| | | ||| |||| || || |||||||| Sbjct 1212 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1153 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 1152 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 1093 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | |||| ||| |||| ||||| |||||| ||||| ||||| Sbjct 1092 TGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCC 1033 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||| ||| | || ||||||||||| || |||||||| Sbjct 1032 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 973 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | ||||| || || ||||| || || || | || || Sbjct 972 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGC 913 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 912 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 853 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || ||||| ||||| ||||| || || ||||| |||||||| || || ||||| Sbjct 852 TAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGG 793 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || | Sbjct 792 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 734 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || |||||||| ||| || | || | || || | Sbjct 733 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCA 674 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | || Sbjct 673 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 614 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || |||||||||||||||| | || ||||| |||||||| | || || ||||| | Sbjct 613 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 554 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 | || ||||| || |||||||| || || || || | || |||| Sbjct 553 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 509 >seq218717 Length=448 Score = 114 bits (126), Expect = 4e-21 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 42625 CGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCT 42684 || || ||||||||| | | || || ||| | || ||||| ||||||| || || Sbjct 217 CGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATATTCA 158 Query 42685 GCCCCTGTG-GCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTT 42743 || ||||| || || || | || || ||| | | |||||| |||| ||||| ||| Sbjct 157 GCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCAAGGAAGTTT 98 Query 42744 TTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGC 42803 || |||| |||||||| || || || |||| |||||||| || | || |||||||| Sbjct 97 TTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGTATTCCAGGC 38 Query 42804 TGAACATAACATTCTTATGCATCCTTTCCA 42833 ||| || |||||||||||||| || || || Sbjct 37 TGAGCACAACATTCTTATGCACCCATTTCA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143077322700944