Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020871.1 Length=133057 Score E Sequences producing significant alignments: (Bits) Value seq78791 107 2e-18 seq151743 89.7 4e-13 >seq78791 Length=51567 Score = 107 bits (118), Expect = 2e-18 Identities = 233/338 (69%), Gaps = 18/338 (5%) Strand=Plus/Plus Query 87354 GGAGCACCCATTAGAGGAGTTCTC-GGTGCTAGTGGAGGAACAGTACCTTGGATTAAACA 87412 || || || ||| | ||| ||| | || || || || ||| |||||||||||| ||| Sbjct 45980 GGTGCTCCTATTCGTGGA-TTCGCTGGAGCAAGCGGTGGAGTTGTACCTTGGATTCGACA 46038 Query 87413 GTTGAATAACACGGCTGTTAGTGTAGACCAATTAGG--AGCAAGAAAAGGTGCTATAACT 87470 | || ||||| ||||| |||||||||||||| ||| || || ||| || | Sbjct 46039 ACTAAACAACACAGCTGTCTCAGTAGACCAATTAGGTAAGC--GATCTGGAGCTGTAGCG 46096 Query 87471 GTAACGTTAGACGTTTTCCACAAAGATATAGAAGCCTTTCTGGATTTAAGACTAAACAAC 87530 || | ||| | ||||||||||| | ||||||| || || || |||| | |||| Sbjct 46097 GTTTATCTTGACATCTTCCACAAAGACGTGCAAGCCTTCCTAGACCTACGACTTAGCAAC 46156 Query 87531 GGAGACCAACGTTTACGGGCTCATGACATT----TTTACTTCTGTTTCTATTCCTGATTT 87586 |||||| || ||| |||||||| ||| || ||| || |||||| ||||| Sbjct 46157 GGAGACGAAAAAGAACGAGCTCATGAGATTCACCTTGGCTTATG----TATTCCAGATTT 46212 Query 87587 ATTTATG-GAA-GCAGTAGAGAATAGAGGAGAATGGTATTTATTTGACCCTTACGAGGTT 87644 ||||||| ||| || | |||||| | ||||| ||| || ||||| || || || || Sbjct 46213 ATTTATGAGAACGCTG-AGAGAAGA-CGGAGAGTGGCATCTATTTTGTCCGTATGAAGTA 46270 Query 87645 AAACAGAAAAAAGGTTGGTACCTACAAGACTACTACGA 87682 || || | || ||| | |||||||| | |||||| Sbjct 46271 GAAAAGTTTATGGGATGGAAACTACAAGATTGCTACGA 46308 >seq151743 Length=442 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 34350 CCGTGCTAAATCAAG-CGCA--AGCTTGTAAATGCCTAACGACTAAATTTCTAGGTAGCT 34406 ||||||||||||| || | |||| ||||||||||||||||||||||||| ||||||| Sbjct 309 CCGTGCTAAATCAGCTCGTATGAGCT-GTAAATGCCTAACGACTAAATTTCTGGGTAGCT 367 Query 34407 AACCAAATGGGGTTAGTGAGAACTAGATAAGAAAA 34441 |||||| |||||||||| ||||||||||| Sbjct 368 GGTAAAATGGTACTAGTGAGAACCAGATAAGAAAA 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424271300769944