Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020873.1 Length=158621 Score E Sequences producing significant alignments: (Bits) Value seq158858 365 5e-96 seq78791 241 1e-58 seq149378 113 5e-20 seq252826 84.2 2e-11 >seq158858 Length=235449 Score = 365 bits (404), Expect = 5e-96 Identities = 502/695 (72%), Gaps = 5/695 (1%) Strand=Plus/Minus Query 70730 AAATACT-GGTGTATTATCATCTACTGCCCAACGGGATCGTAATGCTCCGTTCTTTGTGT 70788 ||||| | || || | || |||||||| ||| || || ||| || || |||||| || Sbjct 147664 AAATAATAGGAGTTTCATGATCTACTGACCATCGACTTCTTAAAGCACCATTCTTTTCGT 147605 Query 70789 AGACTTCTTTTACGATACATACTCCACGTTTCTGCCATACAGGTAAGTCGTTCCAGTTAA 70848 ||| ||||| | ||| |||| |||||||| ||||||||||||||||| |||||||| | Sbjct 147604 AGAACTCTTTAATGATGCATATACCACGTTTTTGCCATACAGGTAAGTCATTCCAGTTGA 147545 Query 70849 GATTCTTTTCTAACATTAACTTATCCTGCATCTGCTTACCGTTTAGACCTTGCAGAGATT 70908 ||| || || |||||||||||||||||| | |||||| || || ||||||| | Sbjct 147544 TATTTTTCTCAGTCATTAACTTATCCTGCATATCCTTACCATTAAGGCCTTGCAATTGCT 147485 Query 70909 TGTGTGGGAAGTTTGCTTGTGCTACCATTGAGATACTATTCTTTGTAGCGTCCTGTTGTC 70968 | ||||| ||||| ||||| || ||||||||||| |||||||||| ||| || ||||||| Sbjct 147484 TATGTGGAAAGTTAGCTTGAGCAACCATTGAGATGCTATTCTTTGAAGCATCTTGTTGTC 147425 Query 70969 TCCATAAGAAGTAGTTGTTTACCTCATCTTGTGGTAAGACCCACGCTCTAGCGTCAAATA 71028 |||| | ||| ||||| |||||||||||||| || ||| || | | | |||||| Sbjct 147424 TCCAAATGAAATAGTTTGCAACCTCATCTTGTGGCAATACCTGTGCGCGACCATCAAATG 147365 Query 71029 ACGCTAATCCTCTCTTAGGGTAGTAAATACCCATTATCTCGTTAAACTTCGCTGTAGCGA 71088 || | | | | | || || | | ||| | || |||||||| || || || | Sbjct 147364 TAGCAAGTGGTTTGTCCGGATATTTCTCTCTCATAACTTCATTAAACTTTGCAGTTGCCA 147305 Query 71089 GCGATGCGGCCACTGAAACGATCTTCTGTAAGTTGTTATCGAACCATGATTGAGTTGTTA 71148 || || | || ||| | ||||| || | ||| || || ||||| ||||||||||| | Sbjct 147304 TAGAAGCCGAAACAGAAGCTATCTTTTGAAGGTTATTTTCAAACCAAGATTGAGTTGTAA 147245 Query 71149 GTTTGTCGTAGTTCGTGATTAGTAGACTGATTTCGTCAGATTGCGTGTATGCTAGTTTAC 71208 | ||||| |||||||| || || | ||| || || || || || ||| ||| ||| Sbjct 147244 GCTTGTCATAGTTCGTAATAAGAATACTAATCTCATCCGACTGATGGTAAACTAATTTCG 147185 Query 71209 AACCCATAACCTCCTCTGCTAAATACATACAAGTTTCCCACATTGCGTCTGCTAGATTCT 71268 ||||||| | | ||||| || | || |||||||| | ||| |||||||||| || Sbjct 147184 CGCCCATAATGTTTTGAGCTAAGTATTTGCATGTTTCCCAAAATGCTTCTGCTAGATCCT 147125 Query 71269 CGTCAAACGGTCGTTTC-ATACCTTTTGTATACGTGTGGAA-TGCCTTACCATCAATACG 71326 |||||| || | | | |||||||||||| || || || || | |||||||| | Sbjct 147124 GGTCAAAAGG-CTTAGCGCAACCTTTTGTATATGTATGAAAGTGTGCT-CCATCAATCCT 147067 Query 71327 TACGATTACAGGCATTCTTTGTGGTAACTTTATTCTATAAGCATTTTCATAACCTTTCAT 71386 ||| || || |||||||||| |||||||| || | ||| ||||| || || | ||||| Sbjct 147066 TACAATCACGGGCATTCTTTCAGGTAACTTAATGCGATATGCATTCTCGTATCTCTTCAT 147007 Query 71387 GCGGTTCCCGAATTTATCCATTTCTAATTCCTCCT 71421 ||| | || | | |||||| ||||||||| Sbjct 147006 GCGATCTCCAATGCTGTCCATTAACTATTCCTCCT 146972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 247/379 (65%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 91368 TTAGCAAAACCACCGAATC--TACCTTTAACAAGTTTAGTTAGGAATAGATGTCTATTGT 91425 || ||| | |||||||||| ||| |||| ||| | || ||||| || | || | Sbjct 232845 TTTGCATATCCACCGAATCGGTAC--TTAATGTTTTTTGATAAGAATAAGTGACGGTTAT 232788 Query 91426 CGATTAATAACTGACCTAGTTCAGAAACCTTGATGTAGTCCTGTGGTCGTGTGAACATTA 91485 ||||||| | || || ||| || |||||||||||| |||| || || || | | Sbjct 232787 CGATTAAGATTTGTCCGAGTGGAGTAACCTTGATGTAATCCTCCGGACGAACAAATAGGA 232728 Query 91486 ACTCAATACTGTTTGGTGCACAGGACATCGCATTCTTAACGAACTTACTCAAATGGTCAA 91545 ||| || | || ||| | | ||| |||| |||| ||||| ||| ||| | Sbjct 232727 TCTCGATGTTATTAGGTACGCTTTGCATAGCATCTCTAACAAACTTGTTCACATGAATGA 232668 Query 91546 TAACCACGTCCACGCTATCTTTCGTGTTTTTATAGTTCTTTCCTCCGAAGTTATCATAAC 91605 | || || || ||| ||||||||| | |||| || || || | | | || Sbjct 232667 TGTTTACATCGACATCATCCTTCGTGTTTCTGAAGTTTTTACCACCTGATGTGTTGTACT 232608 Query 91606 CTTGGAAAGATTCTAACCCCAAGTAGTATTCGATAGGTGGGATACACACACCTCTGAAGT 91665 | | || || || || || ||||| || || | |||||||| || ||||| | ||| Sbjct 232607 CATTAAATGAATCCAAACCTAAGTAATACTCAACTGGTGGGATGCATACACCCTTATAGT 232548 Query 91666 CATAATCAGATTCTTCTGTTTCTGTTCCGTTAGCACGAGAACCATAAGGCGCTAATAGGA 91725 | | ||| ||| ||||| |||||||| | ||| | ||| ||| | || |||| Sbjct 232547 CCTTATCTGATGTATCTGTATCTGTTCCATAGGCATAACTACCTGTAGGAGACAAGAGGA 232488 Query 91726 TCGTTCTCTCTTCCATCCA 91744 | ||||| ||||| | ||| Sbjct 232487 TTGTTCTATCTTCTAACCA 232469 >seq78791 Length=51567 Score = 241 bits (266), Expect = 1e-58 Identities = 330/461 (72%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 5713 GTACACGGAGGGCACAATGGCATCGTCCAGGGAGCTAACTACGGAAATCGTAAAGAGCAC 5772 ||||||||||| ||||| || ||||| || ||||||| || | | ||||||||| Sbjct 38739 GTACACGGAGGTCACAACTCAATTGTCCAAGGTGCTAACTCTGGGGACAGAAAAGAGCAC 38798 Query 5773 ATCATGGACCGCCAAGTAAAAGACGCTCTAATCAGCAAGCTTCGTAGTCTAGGACATACA 5832 | ||||| | | ||| || ||||||||||| ||||| || | | |||| || || Sbjct 38799 GTAATGGATAGACGAGTGAAGGACGCTCTAATTAGCAAACTGAGAGCTTTAGGTCACACT 38858 Query 5833 GTATACGATTGCACAGATGAAACAGGCTCTACACAGTCTGCTAACCTACGTAACATCGTA 5892 |||||||| ||| || || || |||| ||| ||| ||| || ||||||||| Sbjct 38859 GTATACGACGACACTGACGAGGTTGGAACTACTCAGAATGCCAACTTAAACAACATCGTA 38918 Query 5893 GCTAAATGTAACGCTCACCGAGTAGACTTAGACATCTCGTTACACTTAAACGCATTCAAC 5952 ||||| ||||| || ||||||||||| || || | ||||| ||||| | ||| Sbjct 38919 GCTAAGTGTAATAGCCATGCAGTAGACTTAGTTATTTCAGTTCACTTGAACGCTTATAAC 38978 Query 5953 GGTTCTGCTAACGGGGTTGAGGTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTT 6012 ||||| || |||| || |||||| ||||| ||| | |||| || ||| |||| || Sbjct 38979 GGTTCAGCACACGGAGTAGAGGTTCTTTACTATGACAAGCAAGAGCTTGCTTCTAAGGTG 39038 Query 6013 TCTAAACAACTGTCTGATGACATTGGCTGGTCTAACCGTGGAGCTAAAGTACGTACAGAC 6072 || || | ||| | || |||||||||| |||||| ||||| ||| ||| |||||| Sbjct 39039 TCAGCTCAGTTATCTAAGGATATTGGCTGGTATAACCGAGGAGCAAAACAACGCACAGAC 39098 Query 6073 CTTTACGTGTTAAACACTACTAGCGCACCTGCTATCTTAATCGAATTAGGATTCATCGAC 6132 | || ||| | |||| ||||| |||||||| | ||| | || ||||| ||| Sbjct 39099 TTAGCTGTATTAGCTAGAACTACAGCACCAGCTATCTTGCTTGAACTTGGCTTCATTGAC 39158 Query 6133 AACGAGAGCGACATGGCTAAGTGGAACGTAGATAAAATCGC 6173 || |||||||| |||||||| |||||||| || ||||| || Sbjct 39159 AATGAGAGCGATATGGCTAAATGGAACGTTGACAAAATTGC 39199 >seq149378 Length=35185 Score = 113 bits (124), Expect = 5e-20 Identities = 256/373 (69%), Gaps = 29/373 (8%) Strand=Plus/Minus Query 152217 GTACTACCCTCGTTTAGAGAGTTACCACTACTAC---CTGTAGCTCCCCCACGGTTAGGG 152273 ||| |||| || || | |||||| || | | || | |||||||||||||| ||||| Sbjct 23324 GTATTACCTTCATTAACAGAGTTTCCTCCGCCACGCCCAGTAGCTCCCCCACGATTAGGA 23265 Query 152274 AAGTTAATCTCAGATGGGTCGATAGCATAGATAG-AGCAACATACGTTAATTAAATAGTT 152332 |||||||| || ||| | || || | | ||||| | || | ||||| ||||| Sbjct 23264 AAGTTAATTTCTTCTGGCTGAATTTGGTAAACGGCAGCAATA-ACATAAATTAGGTAGTT 23206 Query 152333 CAACCACTTCTCAAATTCCATATCTCTAGATGATTGAGTCATGTTAACGAAATTAACATC 152392 ||| |||| |||||||||||||| || | || ||||||||||| || ||| |||| Sbjct 23205 CAAAAACTTTTCAAATTCCATATCCTTACTAGTCTGTGTCATGTTAACAAACTTAGCATC 23146 Query 152393 CTCGGCAGAGATTACAGGAATCTTCCAAGCTCCATTGATACCACTAAACATTG--CGGTC 152450 | | || || | |||| ||||||||| ||||| |||||| || ||| | || Sbjct 23145 TTGACCTGAAATCATTGGAACCTTCCAAGCGCCATTCATACCA--GCACCTTGACTGTTC 23088 Query 152451 CATTCACGTCTA--AATGCCTGTAACGCTTG--GTTTGATTGGTCTTG----TC-CCGTT 152501 || | ||||| ||| |||| || ||| |||| || | || || ||||| Sbjct 23087 CACT---GTCTACGAATACCTGCAA---TTGCCATTTG-CTGTTGCTGAGCATCACCGTT 23035 Query 152502 ----TTGATATGTAATAGACCTCGTGTTGTACCACCTTGTGCGAAGTACCTAGCATTGAA 152557 || | | ||||| ||| || |||||||||||||| || ||||||||||||| Sbjct 23034 AGGATTTAGAACTAATATACCACGAGTTGTACCACCTTGACTAAAAAACCTAGCATTGAA 22975 Query 152558 TAGCTCTGTATTT 152570 | | || || ||| Sbjct 22974 TTGTTCAGTGTTT 22962 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/183 (70%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 142570 AACGTTCTACTGTTACAGAACCTTCGTACTTTAAGTAAACGTGTTCCTGTGGCATGATAG 142629 ||||||| |||| ||| | ||| ||||||||| | |||||||| ||||||||||| | Sbjct 32986 AACGTTCAACTGATACCGTACCCGTATACTTTAAGAATACGTGTTCATGTGGCATGATTG 32927 Query 142630 AACCGATTTGGTATACCCCAGTTGTACCAAAGCTACGCTCTGCTGAGATAGACTGAGCAC 142689 |||| | || || || || ||||| || || || | | | || ||||||| Sbjct 32926 AACCAAGTTCATACACACCTTGGGTACCGAATGAGCGGTCACCAGTTAATGATTGAGCAC 32867 Query 142690 GAGCAATCGGTACGTTTTTAATCATGAAGT--ATACTGTATTACCAGTCTGTACCGTTTG 142747 || |||| | |||| |||||||||| | |||| | ||||| || | |||||||| Sbjct 32866 GACCAATAACTTCGTTCTTAATCATGATATAAATACGG--TTACCGGTTTCAACCGTTTG 32809 Query 142748 GTT 142750 || Sbjct 32808 CTT 32806 >seq252826 Length=193385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 157664 ATGGTGCCGACTGTAGGAATCGAACCCACGACCTACTGCTTACAAGGCAGTCGCTCTAAC 157723 ||||||||||||| || ||||||| |||||||||| ||||||| |||| ||||| || Sbjct 192023 ATGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCT-AC 191965 Query 157724 CAACTGAGCTAAG 157736 ||||||||||||| Sbjct 191964 CAACTGAGCTAAG 191952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505764108661280