Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_020873.1
Length=158621
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 365 5e-96
seq78791 241 1e-58
seq149378 113 5e-20
seq252826 84.2 2e-11
>seq158858
Length=235449
Score = 365 bits (404), Expect = 5e-96
Identities = 502/695 (72%), Gaps = 5/695 (1%)
Strand=Plus/Minus
Query 70730 AAATACT-GGTGTATTATCATCTACTGCCCAACGGGATCGTAATGCTCCGTTCTTTGTGT 70788
||||| | || || | || |||||||| ||| || || ||| || || |||||| ||
Sbjct 147664 AAATAATAGGAGTTTCATGATCTACTGACCATCGACTTCTTAAAGCACCATTCTTTTCGT 147605
Query 70789 AGACTTCTTTTACGATACATACTCCACGTTTCTGCCATACAGGTAAGTCGTTCCAGTTAA 70848
||| ||||| | ||| |||| |||||||| ||||||||||||||||| |||||||| |
Sbjct 147604 AGAACTCTTTAATGATGCATATACCACGTTTTTGCCATACAGGTAAGTCATTCCAGTTGA 147545
Query 70849 GATTCTTTTCTAACATTAACTTATCCTGCATCTGCTTACCGTTTAGACCTTGCAGAGATT 70908
||| || || |||||||||||||||||| | |||||| || || ||||||| |
Sbjct 147544 TATTTTTCTCAGTCATTAACTTATCCTGCATATCCTTACCATTAAGGCCTTGCAATTGCT 147485
Query 70909 TGTGTGGGAAGTTTGCTTGTGCTACCATTGAGATACTATTCTTTGTAGCGTCCTGTTGTC 70968
| ||||| ||||| ||||| || ||||||||||| |||||||||| ||| || |||||||
Sbjct 147484 TATGTGGAAAGTTAGCTTGAGCAACCATTGAGATGCTATTCTTTGAAGCATCTTGTTGTC 147425
Query 70969 TCCATAAGAAGTAGTTGTTTACCTCATCTTGTGGTAAGACCCACGCTCTAGCGTCAAATA 71028
|||| | ||| ||||| |||||||||||||| || ||| || | | | ||||||
Sbjct 147424 TCCAAATGAAATAGTTTGCAACCTCATCTTGTGGCAATACCTGTGCGCGACCATCAAATG 147365
Query 71029 ACGCTAATCCTCTCTTAGGGTAGTAAATACCCATTATCTCGTTAAACTTCGCTGTAGCGA 71088
|| | | | | | || || | | ||| | || |||||||| || || || |
Sbjct 147364 TAGCAAGTGGTTTGTCCGGATATTTCTCTCTCATAACTTCATTAAACTTTGCAGTTGCCA 147305
Query 71089 GCGATGCGGCCACTGAAACGATCTTCTGTAAGTTGTTATCGAACCATGATTGAGTTGTTA 71148
|| || | || ||| | ||||| || | ||| || || ||||| ||||||||||| |
Sbjct 147304 TAGAAGCCGAAACAGAAGCTATCTTTTGAAGGTTATTTTCAAACCAAGATTGAGTTGTAA 147245
Query 71149 GTTTGTCGTAGTTCGTGATTAGTAGACTGATTTCGTCAGATTGCGTGTATGCTAGTTTAC 71208
| ||||| |||||||| || || | ||| || || || || || ||| ||| |||
Sbjct 147244 GCTTGTCATAGTTCGTAATAAGAATACTAATCTCATCCGACTGATGGTAAACTAATTTCG 147185
Query 71209 AACCCATAACCTCCTCTGCTAAATACATACAAGTTTCCCACATTGCGTCTGCTAGATTCT 71268
||||||| | | ||||| || | || |||||||| | ||| |||||||||| ||
Sbjct 147184 CGCCCATAATGTTTTGAGCTAAGTATTTGCATGTTTCCCAAAATGCTTCTGCTAGATCCT 147125
Query 71269 CGTCAAACGGTCGTTTC-ATACCTTTTGTATACGTGTGGAA-TGCCTTACCATCAATACG 71326
|||||| || | | | |||||||||||| || || || || | |||||||| |
Sbjct 147124 GGTCAAAAGG-CTTAGCGCAACCTTTTGTATATGTATGAAAGTGTGCT-CCATCAATCCT 147067
Query 71327 TACGATTACAGGCATTCTTTGTGGTAACTTTATTCTATAAGCATTTTCATAACCTTTCAT 71386
||| || || |||||||||| |||||||| || | ||| ||||| || || | |||||
Sbjct 147066 TACAATCACGGGCATTCTTTCAGGTAACTTAATGCGATATGCATTCTCGTATCTCTTCAT 147007
Query 71387 GCGGTTCCCGAATTTATCCATTTCTAATTCCTCCT 71421
||| | || | | |||||| |||||||||
Sbjct 147006 GCGATCTCCAATGCTGTCCATTAACTATTCCTCCT 146972
Score = 84.2 bits (92), Expect = 2e-11
Identities = 247/379 (65%), Gaps = 4/379 (1%)
Strand=Plus/Minus
Query 91368 TTAGCAAAACCACCGAATC--TACCTTTAACAAGTTTAGTTAGGAATAGATGTCTATTGT 91425
|| ||| | |||||||||| ||| |||| ||| | || ||||| || | || |
Sbjct 232845 TTTGCATATCCACCGAATCGGTAC--TTAATGTTTTTTGATAAGAATAAGTGACGGTTAT 232788
Query 91426 CGATTAATAACTGACCTAGTTCAGAAACCTTGATGTAGTCCTGTGGTCGTGTGAACATTA 91485
||||||| | || || ||| || |||||||||||| |||| || || || | |
Sbjct 232787 CGATTAAGATTTGTCCGAGTGGAGTAACCTTGATGTAATCCTCCGGACGAACAAATAGGA 232728
Query 91486 ACTCAATACTGTTTGGTGCACAGGACATCGCATTCTTAACGAACTTACTCAAATGGTCAA 91545
||| || | || ||| | | ||| |||| |||| ||||| ||| ||| |
Sbjct 232727 TCTCGATGTTATTAGGTACGCTTTGCATAGCATCTCTAACAAACTTGTTCACATGAATGA 232668
Query 91546 TAACCACGTCCACGCTATCTTTCGTGTTTTTATAGTTCTTTCCTCCGAAGTTATCATAAC 91605
| || || || ||| ||||||||| | |||| || || || | | | ||
Sbjct 232667 TGTTTACATCGACATCATCCTTCGTGTTTCTGAAGTTTTTACCACCTGATGTGTTGTACT 232608
Query 91606 CTTGGAAAGATTCTAACCCCAAGTAGTATTCGATAGGTGGGATACACACACCTCTGAAGT 91665
| | || || || || || ||||| || || | |||||||| || ||||| | |||
Sbjct 232607 CATTAAATGAATCCAAACCTAAGTAATACTCAACTGGTGGGATGCATACACCCTTATAGT 232548
Query 91666 CATAATCAGATTCTTCTGTTTCTGTTCCGTTAGCACGAGAACCATAAGGCGCTAATAGGA 91725
| | ||| ||| ||||| |||||||| | ||| | ||| ||| | || ||||
Sbjct 232547 CCTTATCTGATGTATCTGTATCTGTTCCATAGGCATAACTACCTGTAGGAGACAAGAGGA 232488
Query 91726 TCGTTCTCTCTTCCATCCA 91744
| ||||| ||||| | |||
Sbjct 232487 TTGTTCTATCTTCTAACCA 232469
>seq78791
Length=51567
Score = 241 bits (266), Expect = 1e-58
Identities = 330/461 (72%), Gaps = 0/461 (0%)
Strand=Plus/Plus
Query 5713 GTACACGGAGGGCACAATGGCATCGTCCAGGGAGCTAACTACGGAAATCGTAAAGAGCAC 5772
||||||||||| ||||| || ||||| || ||||||| || | | |||||||||
Sbjct 38739 GTACACGGAGGTCACAACTCAATTGTCCAAGGTGCTAACTCTGGGGACAGAAAAGAGCAC 38798
Query 5773 ATCATGGACCGCCAAGTAAAAGACGCTCTAATCAGCAAGCTTCGTAGTCTAGGACATACA 5832
| ||||| | | ||| || ||||||||||| ||||| || | | |||| || ||
Sbjct 38799 GTAATGGATAGACGAGTGAAGGACGCTCTAATTAGCAAACTGAGAGCTTTAGGTCACACT 38858
Query 5833 GTATACGATTGCACAGATGAAACAGGCTCTACACAGTCTGCTAACCTACGTAACATCGTA 5892
|||||||| ||| || || || |||| ||| ||| ||| || |||||||||
Sbjct 38859 GTATACGACGACACTGACGAGGTTGGAACTACTCAGAATGCCAACTTAAACAACATCGTA 38918
Query 5893 GCTAAATGTAACGCTCACCGAGTAGACTTAGACATCTCGTTACACTTAAACGCATTCAAC 5952
||||| ||||| || ||||||||||| || || | ||||| ||||| | |||
Sbjct 38919 GCTAAGTGTAATAGCCATGCAGTAGACTTAGTTATTTCAGTTCACTTGAACGCTTATAAC 38978
Query 5953 GGTTCTGCTAACGGGGTTGAGGTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTT 6012
||||| || |||| || |||||| ||||| ||| | |||| || ||| |||| ||
Sbjct 38979 GGTTCAGCACACGGAGTAGAGGTTCTTTACTATGACAAGCAAGAGCTTGCTTCTAAGGTG 39038
Query 6013 TCTAAACAACTGTCTGATGACATTGGCTGGTCTAACCGTGGAGCTAAAGTACGTACAGAC 6072
|| || | ||| | || |||||||||| |||||| ||||| ||| ||| ||||||
Sbjct 39039 TCAGCTCAGTTATCTAAGGATATTGGCTGGTATAACCGAGGAGCAAAACAACGCACAGAC 39098
Query 6073 CTTTACGTGTTAAACACTACTAGCGCACCTGCTATCTTAATCGAATTAGGATTCATCGAC 6132
| || ||| | |||| ||||| |||||||| | ||| | || ||||| |||
Sbjct 39099 TTAGCTGTATTAGCTAGAACTACAGCACCAGCTATCTTGCTTGAACTTGGCTTCATTGAC 39158
Query 6133 AACGAGAGCGACATGGCTAAGTGGAACGTAGATAAAATCGC 6173
|| |||||||| |||||||| |||||||| || ||||| ||
Sbjct 39159 AATGAGAGCGATATGGCTAAATGGAACGTTGACAAAATTGC 39199
>seq149378
Length=35185
Score = 113 bits (124), Expect = 5e-20
Identities = 256/373 (69%), Gaps = 29/373 (8%)
Strand=Plus/Minus
Query 152217 GTACTACCCTCGTTTAGAGAGTTACCACTACTAC---CTGTAGCTCCCCCACGGTTAGGG 152273
||| |||| || || | |||||| || | | || | |||||||||||||| |||||
Sbjct 23324 GTATTACCTTCATTAACAGAGTTTCCTCCGCCACGCCCAGTAGCTCCCCCACGATTAGGA 23265
Query 152274 AAGTTAATCTCAGATGGGTCGATAGCATAGATAG-AGCAACATACGTTAATTAAATAGTT 152332
|||||||| || ||| | || || | | ||||| | || | ||||| |||||
Sbjct 23264 AAGTTAATTTCTTCTGGCTGAATTTGGTAAACGGCAGCAATA-ACATAAATTAGGTAGTT 23206
Query 152333 CAACCACTTCTCAAATTCCATATCTCTAGATGATTGAGTCATGTTAACGAAATTAACATC 152392
||| |||| |||||||||||||| || | || ||||||||||| || ||| ||||
Sbjct 23205 CAAAAACTTTTCAAATTCCATATCCTTACTAGTCTGTGTCATGTTAACAAACTTAGCATC 23146
Query 152393 CTCGGCAGAGATTACAGGAATCTTCCAAGCTCCATTGATACCACTAAACATTG--CGGTC 152450
| | || || | |||| ||||||||| ||||| |||||| || ||| | ||
Sbjct 23145 TTGACCTGAAATCATTGGAACCTTCCAAGCGCCATTCATACCA--GCACCTTGACTGTTC 23088
Query 152451 CATTCACGTCTA--AATGCCTGTAACGCTTG--GTTTGATTGGTCTTG----TC-CCGTT 152501
|| | ||||| ||| |||| || ||| |||| || | || || |||||
Sbjct 23087 CACT---GTCTACGAATACCTGCAA---TTGCCATTTG-CTGTTGCTGAGCATCACCGTT 23035
Query 152502 ----TTGATATGTAATAGACCTCGTGTTGTACCACCTTGTGCGAAGTACCTAGCATTGAA 152557
|| | | ||||| ||| || |||||||||||||| || |||||||||||||
Sbjct 23034 AGGATTTAGAACTAATATACCACGAGTTGTACCACCTTGACTAAAAAACCTAGCATTGAA 22975
Query 152558 TAGCTCTGTATTT 152570
| | || || |||
Sbjct 22974 TTGTTCAGTGTTT 22962
Score = 82.4 bits (90), Expect = 8e-11
Identities = 129/183 (70%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 142570 AACGTTCTACTGTTACAGAACCTTCGTACTTTAAGTAAACGTGTTCCTGTGGCATGATAG 142629
||||||| |||| ||| | ||| ||||||||| | |||||||| ||||||||||| |
Sbjct 32986 AACGTTCAACTGATACCGTACCCGTATACTTTAAGAATACGTGTTCATGTGGCATGATTG 32927
Query 142630 AACCGATTTGGTATACCCCAGTTGTACCAAAGCTACGCTCTGCTGAGATAGACTGAGCAC 142689
|||| | || || || || ||||| || || || | | | || |||||||
Sbjct 32926 AACCAAGTTCATACACACCTTGGGTACCGAATGAGCGGTCACCAGTTAATGATTGAGCAC 32867
Query 142690 GAGCAATCGGTACGTTTTTAATCATGAAGT--ATACTGTATTACCAGTCTGTACCGTTTG 142747
|| |||| | |||| |||||||||| | |||| | ||||| || | ||||||||
Sbjct 32866 GACCAATAACTTCGTTCTTAATCATGATATAAATACGG--TTACCGGTTTCAACCGTTTG 32809
Query 142748 GTT 142750
||
Sbjct 32808 CTT 32806
>seq252826
Length=193385
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 157664 ATGGTGCCGACTGTAGGAATCGAACCCACGACCTACTGCTTACAAGGCAGTCGCTCTAAC 157723
||||||||||||| || ||||||| |||||||||| ||||||| |||| ||||| ||
Sbjct 192023 ATGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCT-AC 191965
Query 157724 CAACTGAGCTAAG 157736
|||||||||||||
Sbjct 191964 CAACTGAGCTAAG 191952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505764108661280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |