Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq28607 565 3e-156 seq218717 141 1e-28 >seq28607 Length=83266 Score = 565 bits (626), Expect = 3e-156 Identities = 701/957 (73%), Gaps = 12/957 (1%) Strand=Plus/Minus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTC 155070 || ||||| |||||| | ||||||||| | | | | || || | || ||| || Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1401 Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || ||||||||||| ||||| ||||| |||||||||||||||||||| || |||| ||| Sbjct 1400 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1341 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 | | || || ||||| || || || ||||| || | |||| ||| || |||||| Sbjct 1340 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1281 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGT 155250 | || || || || || |||||||| ||| | ||||||| ||| | ||||| || ||| Sbjct 1280 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1221 Query 155251 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 155307 |||| |||| | || | ||||| | | || | ||| | | | |||||| Sbjct 1220 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGT 1164 Query 155308 CAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 155367 ||||||||||| || |||||| || |||||||||||||| ||||||||| || || Sbjct 1163 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1104 Query 155368 CCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCT 155427 || || | ||||| ||||| ||| | | || || | |||||||| ||| ||| Sbjct 1103 CCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 1044 Query 155428 GATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAA 155487 |||| |||||||| || |||||||||||||| |||| |||| | || ||||| || || Sbjct 1043 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 984 Query 155488 CACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCT 155547 ||||| || ||||||||||| || |||||| | || ||||| ||||| ||||| || || Sbjct 983 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 924 Query 155548 CTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAG 155607 || || ||||||||| ||||| ||||| || ||| | ||| | ||||| || || Sbjct 923 CTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 864 Query 155608 CAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTT 155667 | || ||| || | |||||||| ||||||||||||||||||||||| |||||||| Sbjct 863 AATGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTA 804 Query 155668 GCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGA 155727 ||||||||||| || || || || | |||||||| ||||| |||||||| || | Sbjct 803 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 744 Query 155728 AGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGT 155787 | | || |||||| | || || ||||| || || | || ||| |||||| | ||| Sbjct 743 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 684 Query 155788 GTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT 155847 | || ||||| |||||||| || |||||||| |||||||| || ||||| || | Sbjct 683 ATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGA---T 627 Query 155848 AGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATG 155904 ||| || || || ||| ||||| || ||| ||||||| ||| ||||||||| Sbjct 626 AGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 567 Query 155905 GAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 155961 ||||| ||||| || ||||| ||||||||||||||||| ||||| ||||||| |||| Sbjct 566 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510 >seq218717 Length=448 Score = 141 bits (156), Expect = 1e-28 Identities = 160/213 (75%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 155303 GTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACT 155362 ||||| ||||||||||| || |||| || |||||||||||||| ||||||||| | Sbjct 219 GTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATATT 160 Query 155363 CTGCACCAGTAT-CTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 | || || || | | ||||| | | ||| ||| | ||||||| | |||||||| | Sbjct 159 CAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCAAGGAAGT 100 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || | | ||| |||||||| || |||||| ||||||| |||| ||| | || ||||| Sbjct 99 TTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGTATTCCAG 40 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCAC 155514 || || ||||| || ||||||||||| || ||| Sbjct 39 GCTGAGCACAACATTCTTATGCACCCATTTCAC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582881645739680