Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020877.1 Length=131332 Score E Sequences producing significant alignments: (Bits) Value seq149378 118 9e-22 seq151743 104 2e-17 seq28016 84.2 2e-11 >seq149378 Length=35185 Score = 118 bits (130), Expect = 9e-22 Identities = 333/494 (67%), Gaps = 18/494 (4%) Strand=Plus/Plus Query 14242 CAAAAGACCGTTACAATGAAATACATTTCTGATACTAAAAATATGTCATTGGC-ATCTAG 14300 |||||||| | ||||||||| |||| ||||||||| | | |||||||| || | Sbjct 25945 CAAAAGACTATCTCAATGAAATTCATTGTTGATACTAAGCAAAGCTCATTGGCTATGCAA 26004 Query 14301 TTTAGTAAATAACATTGCTGACCCTGGTCAAATCTTG--ACTGAAGATGCTATCTCAGTT 14358 || ||| | |||| ||||||||| |||| | ||| | || || | | | Sbjct 26005 TTGGCTAAC-ACCATTACTGACCCTGTTCAAGTTTTGGAAATG--GACGGCGTGGAAAAC 26061 Query 14359 GTTGCTAAAACAATTGAATGGGCTTCATTCTATGGTGATGCTTCATTAACTTCTGAAGTT 14418 |||| ||||| |||||||||||| ||||||||||| || |||||| ||| | Sbjct 26062 GTTGTCAAAACTATTGAATGGGCTATCTTCTATGGTGACTCTGACTTAACTGCTGGTGAA 26121 Query 14419 GGTGGAGAAGGACTAGAATTTGATGGACTAGCTAAA-TTAATTGATGCTGATAACGTTAT 14477 || || || || ||||||||||| || || ||| | ||||||||| ||||| || Sbjct 26122 AAGGGCGATGGTCTGGAATTTGATGG-CTTGCAAAAGCTTATTGATGCTCATAACCACAT 26180 Query 14478 CGACGCTAAAGGCGCTCACTTAGATGAGA-AATTATTAAACCTAGCTTCAGTTAAAATCG 14536 ||| | |||| | | ||| | | | || | | ||| ||| | ||||| || | Sbjct 26181 TGACCTTGAAGGTGGAGAATTA-ACGCCACAAGTGCTTAACAAAGCCGCTGTTAAGATTG 26239 Query 14537 GTAAAGGTTTTGGTACAGCTACAGATGCTTACATGCCTATCGGTGTACATTCTGACTTTG 14596 || ||||||| ||| || || |||||||| |||||||| ||||| | |||||||| Sbjct 26240 GTGAAGGTTTCGGTGTTGCAACTGATGCTTATATGCCTATTGGTGTTAAGGCTGACTTTA 26299 Query 14597 T-TACTAATATTTTAGGTCGACAA-ATGCAATTAATGCAAGACAA--TAGTGGTAATGTA 14652 | || || | |||||| |||| | || | | | ||| | ||||| ||| | Sbjct 26300 TCAACCAACA-CTTAGGTGCACAACGTATTATGCTTCCCGGTCAAACTGGTGGT-ATGGA 26357 Query 14653 AATACTGGTTTCAGTGTTAACGGATTCTATTCATCTCGTGGATTCATTAGATTACATGGT 14712 | |||||||| || || | |||| ||| | ||||| ||||| || |||||| Sbjct 26358 A--ACTGGTTTAGACATTGACCGTTTCTTATCAGCACGTGGTAACATTAAGTTGCATGGT 26415 Query 14713 TCTACTGTAATGGA 14726 || ||| | ||||| Sbjct 26416 TCAACTATTATGGA 26429 >seq151743 Length=442 Score = 104 bits (114), Expect = 2e-17 Identities = 107/137 (78%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 918 CCTGGTAAGAGAGACTAAGTCCT--AATGGATAGAGTTAA--TACCGTGCTAAATCAAC- 972 ||| |||||||||||||| || ||||| | ||||| ||||||||||||||| | Sbjct 265 CCTAGTAAGAGAGACTAAACCCAGCAATGGGCAATGTTAACCTACCGTGCTAAATCAGCT 324 Query 973 CTAATAAGTTGTAAATGCCGAACGACTAAATTTCTAGATAGCTTATTAAAAGGAATAAGT 1032 | || || |||||||||| ||||||||||||||| | ||||| | ||| || | ||| Sbjct 325 CGTATGAGCTGTAAATGCCTAACGACTAAATTTCTGGGTAGCTGGTAAAATGGTACTAGT 384 Query 1033 GAAAACTAGATAAGAAA 1049 || ||| |||||||||| Sbjct 385 GAGAACCAGATAAGAAA 401 >seq28016 Length=334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14346 TGCTATCTCAGTTGTTGCTAAAACAATTGAATGGGCTTCATTCTATGGTGATGCTTCATT 14405 ||||||||| | ||||| ||| ||| |||||||||| ||||||||||||||| || Sbjct 160 TGCTATCTCTGCTGTTGTTAAGACAGATGAATGGGCTATGTTCTATGGTGATGCTGACTT 219 Query 14406 AACTTCTGAAGTTGGTGGAGAAGGACTAGAATTTGATGGACTAGCTAAATTAATTGATGC 14465 |||||| | | || ||||||||| |||| ||||| ||| || | ||||| | Sbjct 220 AACTTCCGGTCAAGAAGGCGAAGGACTACAATTCGATGGTCTATTCAAGCTTATTGACCC 279 Query 14466 TGATAACGTTATCGAC 14481 || |||| ||| ||| Sbjct 280 TGCTAACCATATTGAC 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418769278533644