Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq28607 520 3e-143 seq218717 141 3e-29 >seq28607 Length=83266 Score = 520 bits (576), Expect = 3e-143 Identities = 711/993 (72%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 40523 CTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 |||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 510 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 569 Query 40583 ACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 ||| || | | ||||| || ||||||||||||| ||| || || | | || Sbjct 570 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 629 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 |||||||| ||||| || || |||||||| ||||| |||||||| || ||||| | Sbjct 630 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 689 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCT 40762 | |||| ||| || || | ||||| |||| | | ||||| |||| | ||| Sbjct 690 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 749 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 ||||||||| ||||||||| || || | || ||||| ||||| || |||||||| || Sbjct 750 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 809 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 ||| ||||| || |||| || || || || || || | || |||||| |||| || Sbjct 810 GTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGT 869 Query 40883 GGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 ||| |||| || | ||||| || | | || ||||||||| ||| | | || Sbjct 870 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 929 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || || || || || || | ||| || ||||||||||| ||||||||||| || || Sbjct 930 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 989 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| || Sbjct 990 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 1049 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | || ||||| | ||| || | ||||| ||||| || |||| | ||||||| Sbjct 1050 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGA 1109 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 1110 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1169 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 || ||||| || | ||||||||| | ||||| |||| ||| || |||||||| Sbjct 1170 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1229 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||||||| || || | | | ||||||||||| ||||| ||||| | || || || Sbjct 1230 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 1289 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 ||| | |||| | || || || ||||||||||| ||||| | | || || || Sbjct 1290 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1349 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || ||||| |||||||| || || || || || || ||||| || || Sbjct 1350 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1409 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 | | || || || | ||| | || ||||| | ||||||||||| || | ||| || Sbjct 1410 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1469 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || || ||||| || | ||||||||| || Sbjct 1470 ACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 1502 >seq218717 Length=448 Score = 141 bits (156), Expect = 3e-29 Identities = 188/260 (72%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 40971 TGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTT 41030 || ||||||||||| ||||||||||| || || ||||| |||| || |||||||| || Sbjct 8 TGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGTA 67 Query 41031 CCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAG 41090 | | |||||||| ||||||||||| | | ||| || ||||| | |||||||| ||| Sbjct 68 CAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAAG 127 Query 41091 AATACAGCTAGAGCTGCTG-ACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCAT 41149 || ||| | | ||| |||| | | ||||||| ||||| |||| ||||| || | ||| Sbjct 128 AAAACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCAT 187 Query 41150 ACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAA 41209 ||| || | | ||||||||||| | || || | ||| || ||| |||| Sbjct 188 ACCCAGACATAAACTAAGTTCCCACTCACGACTCATATAACAAGTTACACCAATTTAAAA 247 Query 41210 GTGAAAGACAATGAGTTGAT 41229 ||| | ||||| |||| || Sbjct 248 GTGTAGAACAATTAGTTCAT 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143246384503752