Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021067.1 Length=135982 Score E Sequences producing significant alignments: (Bits) Value seq136237 95.1 1e-14 seq9459 86.0 5e-12 >seq136237 Length=303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/243 (70%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 3019 GCAATTGCATTGATGGTTAGATCACGTCTACGTAAATCCTCTTCCAGTGTAACCCCA--T 3076 ||||| ||||| || || | ||| |||| ||||||| ||||| ||| || || | Sbjct 243 GCAATCGCATTCATTGTAAAATCTCGTCGCGCCAAATCCTGTTCCAATGTCACATCAGAT 184 Query 3077 CCCACTCACAA-GTAAAGCCTTCATAACCCGTACCCGTCTTACGATCTGTTCTGGCAAGA 3135 | | ||| | ||| || | || ||| ||||| ||||| || |||||||| | Sbjct 183 GCAGCAGACACTGCAAATCCCTTGTAGCCCTTACCCACTTTACGCTCAGTTCTGGCTAAG 124 Query 3136 GCATACTCATCTCCGGTTTCTGGATGTAAGAATACGGGAAAGTCTTTACCTACCTGCTTG 3195 ||||| ||||| |||| ||| || || || || ||||| ||||| |||||| ||||| Sbjct 123 GCATATTCATCATGTGTTTTTGGGTGCAAAAAAACTGGAAAATCTTTGCCTACC-GCTTG 65 Query 3196 A-AACCTAACGA--CAACATTTCCTCTGGACTACTCCCAACCACAACATAATCTTTATCT 3252 |||| ||| ||||||||| || ||||| || ||||||||||| || | ||| Sbjct 64 GTAACC--ACGTTTCAACATTTCGTCAACGCTACTGCCCACCACAACATAGTCGTGATCC 7 Query 3253 TTA 3255 ||| Sbjct 6 TTA 4 >seq9459 Length=1126 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 11494 TAAAACAATGACTCCTTTTGGTTTAATGATACGCTTTAATTGCTCCCACA--TTGCATCA 11551 ||| ||||| | ||| |||| ||||| || || |||| ||||| | ||| | | Sbjct 417 TAACACAATTGCACCTCTTGGCTTAATTATGCGTCGATATTGTTCCCAAAGCTTGTCTGA 358 Query 11552 AGTGGAATAACCGAATCCCATTTATTTCGAGTTGTACCATAAGGTGGATCGGTTAAAATC 11611 | |||| ||| |||||| | ||| || |||||||| ||| || |||| Sbjct 357 --TTGAATTACCTTATCCCACGAAGAAGCAGTAGTCCCATAAGGCAAATCACATAGAATC 300 Query 11612 ATATCAATTGAACCGTCAGGAATACCTTTCATCACTTCTAGACAATCACCTTT 11664 || ||||| |||||||| |||||| ||||||||| ||| |||||||||||||| Sbjct 299 ATGTCAATGGAACCGTCTGGAATATCTTTCATCAGTTCAAGACAATCACCTTT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433600816735844