Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 607 9e-169
seq218717 147 2e-30
>seq28607
Length=83266
Score = 607 bits (672), Expect = 9e-169
Identities = 738/1002 (74%), Gaps = 18/1002 (2%)
Strand=Plus/Plus
Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408
|| |||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 507 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 566
Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468
||| ||||| || | ||||| || || ||||||||| ||| || || |||
Sbjct 567 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 623
Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525
||||| || ||||||||||| |||||||| || |||||||| ||||| || |
Sbjct 624 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAAT 683
Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585
||| | ||||| ||||| || | || || || | || || | |||||| || | |
Sbjct 684 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 743
Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645
| || ||||||||| ||||| ||||||||||| || || || || |||||||||||
Sbjct 744 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGC 803
Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705
|||||||||||||| ||||||||||||||||| |||||||| | || || || |
Sbjct 804 TACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATT 863
Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765
|| || ||||| ||||| | | |||||| || | ||||| |||||||||||||| ||
Sbjct 864 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 923
Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825
|| || ||||||||||| ||||| || | ||| || |||||||||||||| ||||||||
Sbjct 924 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 983
Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885
||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||
Sbjct 984 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 1043
Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945
||| ||| |||||||| | || |||| |||||| ||||| ||| || | || ||
Sbjct 1044 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGG 1103
Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005
||| || ||||| ||| ||||||||||||||||| |||||| || |||||||||||
Sbjct 1104 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1163
Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062
|||||| | | | ||| | || | | ||||| | || | |||| ||||
Sbjct 1164 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 1220
Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122
|| || || || | ||| ||||| | | ||| ||||||||||| || || || || |
Sbjct 1221 ACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAA 1280
Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182
||| || || ||| |||||| || ||||| ||||| || ||||| ||||| | ||
Sbjct 1281 ACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAG 1340
Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242
|| || | ||||||||| | |||||||| ||||| |||||||| || |||||||||||
Sbjct 1341 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 1400
Query 68243 AATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299
|| || || | |||| ||| | | ||| ||| |||||||| ||||| |||||
Sbjct 1401 GATAATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 1457
Query 68300 ACCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341
|||| || | ||||| ||| ||| | |||||||||
Sbjct 1458 TCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACA 1499
>seq218717
Length=448
Score = 147 bits (162), Expect = 2e-30
Identities = 163/215 (76%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 67800 TGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTA 67859
|| |||||||||||||| ||||||||||| || ||||| || | || |||| ||||||
Sbjct 8 TGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGTA 67
Query 67860 CCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAG 67919
| ||| || || |||||||| | | | | ||| |||||||| | ||||| | ||||
Sbjct 68 CAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAAG 127
Query 67920 AACACAGCGAAT----GCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACG 67975
|| ||| | ||| |||||| ||| ||||| || ||||| ||| |||||||||||
Sbjct 128 AAAACAAC-AATAGCAGCTGCAAACA--GGAGCTGAATATGCAACAACAATCCAAGGACG 184
Query 67976 CATACCAAGACGGTAAGAAAGTTCCCACTGACGAC 68010
|||||| |||| || ||||||||||| |||||
Sbjct 185 CATACCCAGACATAAACTAAGTTCCCACTCACGAC 219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565053397920480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |