Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq28607 607 9e-169 seq218717 147 2e-30 >seq28607 Length=83266 Score = 607 bits (672), Expect = 9e-169 Identities = 738/1002 (74%), Gaps = 18/1002 (2%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 507 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 566 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 567 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 623 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| ||||| || | Sbjct 624 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAAT 683 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 684 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 743 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||||||||| || || || || ||||||||||| Sbjct 744 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGC 803 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||||||||| |||||||| | || || || | Sbjct 804 TACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATT 863 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || Sbjct 864 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 923 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 924 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 983 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 984 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 1043 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| |||||||| | || |||| |||||| ||||| ||| || | || || Sbjct 1044 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGG 1103 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct 1104 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 1163 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 1164 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 1220 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 || || || || | ||| ||||| | | ||| ||||||||||| || || || || | Sbjct 1221 ACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAA 1280 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 ||| || || ||| |||||| || ||||| ||||| || ||||| ||||| | || Sbjct 1281 ACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAG 1340 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| Sbjct 1341 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 1400 Query 68243 AATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 || || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| Sbjct 1401 GATAATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 1457 Query 68300 ACCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 |||| || | ||||| ||| ||| | ||||||||| Sbjct 1458 TCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACA 1499 >seq218717 Length=448 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 67800 TGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTA 67859 || |||||||||||||| ||||||||||| || ||||| || | || |||| |||||| Sbjct 8 TGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGTA 67 Query 67860 CCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAG 67919 | ||| || || |||||||| | | | | ||| |||||||| | ||||| | |||| Sbjct 68 CAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAAG 127 Query 67920 AACACAGCGAAT----GCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACG 67975 || ||| | ||| |||||| ||| ||||| || ||||| ||| ||||||||||| Sbjct 128 AAAACAAC-AATAGCAGCTGCAAACA--GGAGCTGAATATGCAACAACAATCCAAGGACG 184 Query 67976 CATACCAAGACGGTAAGAAAGTTCCCACTGACGAC 68010 |||||| |||| || ||||||||||| ||||| Sbjct 185 CATACCCAGACATAAACTAAGTTCCCACTCACGAC 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565053397920480