Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021072.1
Length=178807
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 686 0.0
seq218717 131 2e-25
seq89940 91.5 2e-13
seq135351 89.7 6e-13
>seq28607
Length=83266
Score = 686 bits (760), Expect = 0.0
Identities = 738/974 (76%), Gaps = 2/974 (0%)
Strand=Plus/Plus
Query 67833 CTCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCAT 67892
|||| ||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||
Sbjct 510 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 569
Query 67893 ACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATC 67952
||| | ||| ||||| | || || ||||| ||| | ||| || ||||||
Sbjct 570 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 629
Query 67953 AAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAG 68012
|| | || |||||||| ||||||||||| |||||||| ||||||||||||| ||| |
Sbjct 630 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 689
Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGA 68072
||||| ||||| ||||| || || ||||| || || | |||||| || | ||||| ||
Sbjct 690 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 749
Query 68073 GTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAAT 68132
|||||||| ||||| |||||||||| || || || || ||||| ||||| |||||
Sbjct 750 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 809
Query 68133 GTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGT 68192
||||||||| ||||||||||| ||||| |||||||| | || || ||| |||| ||
Sbjct 810 GTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGT 869
Query 68193 GGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCC 68252
|||||| | | || |||||| |||| |||||||||||| ||||| || || || ||
Sbjct 870 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 929
Query 68253 ACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 68312
|| ||||| ||||| || || | ||| || || |||||||| || ||||||||||| ||
Sbjct 930 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 989
Query 68313 TTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAA 68372
||||| || | ||| |||||||||||||||| || || |||||||| | ||||| ||
Sbjct 990 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 1049
Query 68373 CGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGA 68432
|||||||| | || |||| || ||| || || | ||| ||||||||||| || ||
Sbjct 1050 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGA 1109
Query 68433 GTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCC 68492
||||||||| ||||||||||||||||| ||||| | ||||||||| ||||| ||
Sbjct 1110 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1169
Query 68493 CATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATT 68552
||| || | | ||||| | ||||| | | | |||| ||||||| || ||
Sbjct 1170 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1229
Query 68553 GTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGC 68612
||| | ||| ||||||| || ||| |||||||| || || ||||| || | |||||| ||
Sbjct 1230 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 1289
Query 68613 ATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGC 68672
||| |||||| || ||||| ||||| || ||||| || || ||||| || ||||
Sbjct 1290 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1349
Query 68673 AACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA 68732
||||||||||||||||||||| || || || || |||||||| ||||| |||| || ||
Sbjct 1350 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1409
Query 68733 ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAA 68791
| | ||||| | ||| || ||||||||||||| || || ||||| |||| |||||
Sbjct 1410 AACGGAAGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCAATGTAAA 1468
Query 68792 GGCGGTTCTCTGTG 68805
| || || || |||
Sbjct 1469 GACGATTTTCAGTG 1482
Score = 594 bits (658), Expect = 6e-165
Identities = 740/1010 (73%), Gaps = 8/1010 (1%)
Strand=Plus/Minus
Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645
||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || |
Sbjct 33421 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 33362
Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705
|||| || |||| ||| ||||||| |||||| || || ||||| || || || ||||
Sbjct 33361 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 33302
Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765
| ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| ||||
Sbjct 33301 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 33242
Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825
| ||||| | ||| || || | | || | | ||| |||| | ||| | || || |
Sbjct 33241 GTAGGTTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTA 33182
Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885
|||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || |
Sbjct 33181 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 33122
Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945
|||| |||||||| || || |||||||| ||||||||||| ||||||| | || || |
Sbjct 33121 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 33062
Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005
| ||| || ||||| |||||||||||| | | |||||| ||||| ||| ||||||
Sbjct 33061 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 33002
Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065
|||| || | |||| || | ||||| | ||| || || |||||||||||||| ||||
Sbjct 33001 GAATAGCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGT 32942
Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125
|||| ||||| ||||| || ||||| | ||||| | ||||||||| || || | || |
Sbjct 32941 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 32882
Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185
| ||| || || || ||||||| ||||||||||| || || || || |||||| ||
Sbjct 32881 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAAGACAGAAA 32822
Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244
|||||||||| || ||||||||||| || || ||||| || || || | | || ||
Sbjct 32821 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACGGAT 32763
Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304
|| || |||||||| || || | ||| ||||| |||| |||||||| |||||||| ||
Sbjct 32762 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCA 32703
Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364
|||||| ||| || || || | ||| ||| || ||||| || || | ||||||
Sbjct 32702 ACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 32643
Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424
||||| |||| | | |||||| | | | || |||||| || || || || || ||
Sbjct 32642 CCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACGGCAGCGGTT 32583
Query 67425 AGAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481
| |||||| ||| || | || ||||| || | ||| ||||| ||||| ||
Sbjct 32582 AAAAAATTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTT 32526
Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541
||||| || ||||| || | ||| || || | || | ||| ||| ||||| || | |
Sbjct 32525 ACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAAT 32466
Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591
|| ||||||||||| ||||| || ||||| || | | |||||||||
Sbjct 32465 AGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATC 32416
>seq218717
Length=448
Score = 131 bits (144), Expect = 2e-25
Identities = 161/219 (74%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 68281 TGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTA 68340
|| || |||||||| || ||||||||||| || ||||| || | || |||||||||||
Sbjct 8 TGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGTA 67
Query 68341 CCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGG 68400
| ||| || || |||||||| | | | | || |||||||| | ||||| | || |
Sbjct 68 CAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAAG 127
Query 68401 AAGACTGCGGATGCTGCTGC-AACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCAT 68459
|| || | || ||||| |||||| || || ||||||||| ||||||||||||||
Sbjct 128 AAAACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCAT 187
Query 68460 ACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498
||| |||| | ||||||||| ||||| | ||| ||
Sbjct 188 ACCCAGACATAAACTAAGTTCCCACTCACGACTCATATA 226
>seq89940
Length=26391
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560
||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| ||
Sbjct 1491 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 1434
Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582
||| || |||||||||||||||
Sbjct 1433 TCTACCACTGAGCTACTGAGGA 1412
>seq135351
Length=41855
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570
||||||| |||||||| |||||||||||||||| ||||||| ||| ||||| || |||
Sbjct 2216 CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGCTCTACCACTG 2157
Query 35571 AGCTACTGAGGA 35582
||||||||||||
Sbjct 2156 AGCTACTGAGGA 2145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570143538084960
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