Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq28607 686 0.0 seq218717 131 2e-25 seq89940 91.5 2e-13 seq135351 89.7 6e-13 >seq28607 Length=83266 Score = 686 bits (760), Expect = 0.0 Identities = 738/974 (76%), Gaps = 2/974 (0%) Strand=Plus/Plus Query 67833 CTCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCAT 67892 |||| ||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||| Sbjct 510 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 569 Query 67893 ACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATC 67952 ||| | ||| ||||| | || || ||||| ||| | ||| || |||||| Sbjct 570 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 629 Query 67953 AAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAG 68012 || | || |||||||| ||||||||||| |||||||| ||||||||||||| ||| | Sbjct 630 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCTAA 689 Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGA 68072 ||||| ||||| ||||| || || ||||| || || | |||||| || | ||||| || Sbjct 690 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 749 Query 68073 GTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAAT 68132 |||||||| ||||| |||||||||| || || || || ||||| ||||| ||||| Sbjct 750 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 809 Query 68133 GTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGT 68192 ||||||||| ||||||||||| ||||| |||||||| | || || ||| |||| || Sbjct 810 GTTGTAAGTTTCTTCTTCTTGTCCGAATTTGTAACCTTCATTAGCAGATTCATTTTCTGT 869 Query 68193 GGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCC 68252 |||||| | | || |||||| |||| |||||||||||| ||||| || || || || Sbjct 870 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 929 Query 68253 ACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 68312 || ||||| ||||| || || | ||| || || |||||||| || ||||||||||| || Sbjct 930 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 989 Query 68313 TTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAA 68372 ||||| || | ||| |||||||||||||||| || || |||||||| | ||||| || Sbjct 990 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 1049 Query 68373 CGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGA 68432 |||||||| | || |||| || ||| || || | ||| ||||||||||| || || Sbjct 1050 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGA 1109 Query 68433 GTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCC 68492 ||||||||| ||||||||||||||||| ||||| | ||||||||| ||||| || Sbjct 1110 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1169 Query 68493 CATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATT 68552 ||| || | | ||||| | ||||| | | | |||| ||||||| || || Sbjct 1170 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 1229 Query 68553 GTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGC 68612 ||| | ||| ||||||| || ||| |||||||| || || ||||| || | |||||| || Sbjct 1230 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 1289 Query 68613 ATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGC 68672 ||| |||||| || ||||| ||||| || ||||| || || ||||| || |||| Sbjct 1290 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1349 Query 68673 AACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA 68732 ||||||||||||||||||||| || || || || |||||||| ||||| |||| || || Sbjct 1350 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1409 Query 68733 ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAA 68791 | | ||||| | ||| || ||||||||||||| || || ||||| |||| ||||| Sbjct 1410 AACGGAAGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCAATGTAAA 1468 Query 68792 GGCGGTTCTCTGTG 68805 | || || || ||| Sbjct 1469 GACGATTTTCAGTG 1482 Score = 594 bits (658), Expect = 6e-165 Identities = 740/1010 (73%), Gaps = 8/1010 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 33421 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 33362 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || ||||| || || || |||| Sbjct 33361 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGA 33302 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 33301 AAGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 33242 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | ||| || || | | || | | ||| |||| | ||| | || || | Sbjct 33241 GTAGGTTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTA 33182 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 33181 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTG 33122 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| ||||||||||| ||||||| | || || | Sbjct 33121 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 33062 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 33061 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 33002 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| || | ||||| | ||| || || |||||||||||||| |||| Sbjct 33001 GAATAGCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGT 32942 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| || ||||| | ||||| | ||||||||| || || | || | Sbjct 32941 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACAC 32882 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| ||||||||||| || || || || |||||| || Sbjct 32881 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAAGACAGAAA 32822 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || ||||||||||| || || ||||| || || || | | || || Sbjct 32821 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACGGAT 32763 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||| ||||| |||| |||||||| |||||||| || Sbjct 32762 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCA 32703 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| ||| || || || | ||| ||| || ||||| || || | |||||| Sbjct 32702 ACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGA 32643 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | |||||| | | | || |||||| || || || || || || Sbjct 32642 CCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACGGCAGCGGTT 32583 Query 67425 AGAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 | |||||| ||| || | || ||||| || | ||| ||||| ||||| || Sbjct 32582 AAAAAATTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTT 32526 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| || ||||| || | ||| || || | || | ||| ||| ||||| || | | Sbjct 32525 ACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAAT 32466 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || ||||||||||| ||||| || ||||| || | | ||||||||| Sbjct 32465 AGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATC 32416 >seq218717 Length=448 Score = 131 bits (144), Expect = 2e-25 Identities = 161/219 (74%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 68281 TGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTA 68340 || || |||||||| || ||||||||||| || ||||| || | || ||||||||||| Sbjct 8 TGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATAATAAAGTTGAAAGTA 67 Query 68341 CCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGG 68400 | ||| || || |||||||| | | | | || |||||||| | ||||| | || | Sbjct 68 CAAGAGATTCCTAGAGGCATACCATTAAAAAAACTTCCTTGACCAATTGGATAAATCAAG 127 Query 68401 AAGACTGCGGATGCTGCTGC-AACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCAT 68459 || || | || ||||| |||||| || || ||||||||| |||||||||||||| Sbjct 128 AAAACAACAATAGCAGCTGCAAACAGGAGCTGAATATGCAACAACAATCCAAGGACGCAT 187 Query 68460 ACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 ||| |||| | ||||||||| ||||| | ||| || Sbjct 188 ACCCAGACATAAACTAAGTTCCCACTCACGACTCATATA 226 >seq89940 Length=26391 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| || Sbjct 1491 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 1434 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 1433 TCTACCACTGAGCTACTGAGGA 1412 >seq135351 Length=41855 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 2216 CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGCTCTACCACTG 2157 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 2156 AGCTACTGAGGA 2145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570143538084960