Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq210337 122 2e-22 seq204555 118 2e-21 seq50902 118 2e-21 seq117562 114 2e-20 seq167623 113 8e-20 seq78792 111 3e-19 seq54724 109 1e-18 seq91578 105 1e-17 seq66861 105 1e-17 seq189123 98.7 2e-15 seq8584 89.7 9e-13 seq46463 86.0 1e-11 >seq210337 Length=1863 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||||||| || |||| ||||| || | ||| || || |||||||| Sbjct 1495 ATACCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCA 1554 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| |||||| ||||| || || |||| || ||||| ||| Sbjct 1555 GCCAAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGA 1614 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | || || || || || ||| Sbjct 1615 GGAATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCG 1674 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || |||||||| || ||||||||||| Sbjct 1675 ACCTCGAGAGTTATGGTCTTTCCAGTAAGCGTTTTCACGAATATTTGCAT 1724 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | |||||||||| || | || | |||||| || || || || Sbjct 1039 ATACCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCC 1098 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||| || |||||||| || | |||||| ||||| ||| Sbjct 1099 GCAAGAGTACGTCCATCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGA 1158 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| || || || || | || | ||| || |||||||| |||| Sbjct 1159 GGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCA 1218 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || ||||| || || || || || ||||| |||||||| Sbjct 1219 ACCTCAAGAGTAATGGTTTTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 1268 >seq204555 Length=10983 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || || | || | |||||| ||| || ||||| | ||| || | | | Sbjct 1276 CGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCA 1335 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || ||||| |||| ||||| || || || || || ||||||||| Sbjct 1336 TCTTCGAGTTGTTTCCCCGCAAAGATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTA 1395 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| ||| ||| || || || ||||||||| | |||||| Sbjct 1396 TCTTGAATCTTTGCCTTTACATTGTCAATCGTGTCTGAGCTCTCAACTTCCAAAGTTATG 1455 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || ||||| ||||| Sbjct 1456 GTTTTACCGGTAAGGGTCTTAACGAATATCTGCAT 1490 >seq50902 Length=6384 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || || | || | |||||| ||| || ||||| | ||| || | | | Sbjct 4570 CGGAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCA 4511 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||| ||||| |||| |||||||| || ||||| || ||||||||| Sbjct 4510 TCTTCGAGCTGTTTTCCCGCAAAGATTAGCCTCTGTTGGTCCGGAGGGATCCCTTCTTTA 4451 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || ||||| | ||| ||| ||||| || || || || ||||| || Sbjct 4450 TCTTGAATCTTCGTTTTCACATTGTCAATTGTATCCGAGCTTTCGACCTCAAGAGTGATG 4391 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | || || || ||||| ||||| Sbjct 4390 GTTTTACCCGTCAAAGTCTTGACGAATATCTGCAT 4356 >seq117562 Length=2070 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||||||||| || |||| ||||| || | ||| || || ||| Sbjct 1238 ATTTGCATACCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTA 1179 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || || | ||| |||| ||||| ||||| || || |||| || ||| Sbjct 1178 TAGTCAGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGA 1119 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || || || || || | || | || || || || || Sbjct 1118 TCCGGAGGAATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAG 1059 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || |||||||| || || || || || ||||| || ||||||||||| Sbjct 1058 CTCTCGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||| || |||||| ||||| | | ||| | | ||| || | || || || Sbjct 1655 GTAGACTCCTTCTGAATATTGTAGTCCGCAAGCGTACGACCATCCTCGAGCTGCTTACCA 1596 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 || || || | |||||| ||||| ||||| || ||||| || ||||| || || | || Sbjct 1595 GCGAAGATGAGTCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCTTGGATCTTAGCCTTG 1536 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | ||| || || || || ||||||||||||||| || ||||| || || || || Sbjct 1535 ACATTGTCTATTGTGTCTGAGCTCTCAACTTCTAGAGTAATGGTTTTCCCGGTGAGGGTC 1476 Query 193344 TTTACAAATATTTGCAT 193360 || || ||||| ||||| Sbjct 1475 TTCACGAATATCTGCAT 1459 >seq167623 Length=7090 Score = 113 bits (124), Expect = 8e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| ||||| |||| ||| ||||| || || |||||||| || Sbjct 2547 TCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTG 2488 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| || |||||||| || || || || |||||||| Sbjct 2487 TCTTGGATCTTCGCTTTGACATTGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATC 2428 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || || ||||| Sbjct 2427 GTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 2393 >seq78792 Length=14290 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| ||||| || || | ||| | || | || || || || || |||| Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| || || ||||||||||||||||| || || | || || || || || Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || ||||| || || | ||| | ||| || || || ||||| ||||| Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 11490 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 ||||| ||||| || || || ||||| ||||| || || || ||||||| Sbjct 11489 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTT 11441 >seq54724 Length=7877 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||| || | |||| |||||| |||||| |||||| Sbjct 2104 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCG 2045 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| || || | ||| ||||||||||| || |||||||| || || ||| Sbjct 2044 GCCAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGA 1985 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| || || || |||| ||| | || || || || || |||| Sbjct 1984 GGGATACCTTCTTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCA 1925 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||||||| || | || || ||||| || ||||| Sbjct 1924 ACCTCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| |||||||| || ||||||||||| ||||| ||||| |||||||| ||| Sbjct 1801 TCCTCAAGTTGCTTTCCGGCGAAGATTAATCTCTGCTGATCCGGAGGAATTCCTTCCTTA 1742 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | || || || || ||| |||||| || || || ||| Sbjct 1741 TCTTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCAACCTCGAGGGTAATA 1682 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | || || ||||| || ||||| Sbjct 1681 GTTTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 1647 >seq91578 Length=16840 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| || ||||| | ||| | || || || || ||||||| Sbjct 241 ACCACCACGGAGACGAAGGACGAGATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGC 300 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | || || | |||||||||||| ||||| |||| |||||||| || || Sbjct 301 GAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAAATCAATCGTTGTTGATCCGGTGG 360 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| || ||||| || || | || | ||| || ||||| || || ||||| Sbjct 361 GATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATCGTATCCGATGATTCAAC 420 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || || || ||||| ||||| || || || ||||| || Sbjct 421 CTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 471 >seq66861 Length=20397 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| ||||| |||| || ||||| || || |||||||| || Sbjct 17414 TCTTCAAGTTGTTTTCCGGCGAAAATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTG 17355 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| || |||||||| || ||||| || || ||||| Sbjct 17354 TCTTGGATCTTCGCCTTGACATTGTCGATCGTATCGGATGATTCAACCTCGAGCGTTATC 17295 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| ||||| || || || ||||| || Sbjct 17294 GTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 17257 >seq189123 Length=1720 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || || || || | ||| ||||| || ||||| || ||||| ||||||| ||| Sbjct 608 TGTTTACCAGCGAAGATGAGTCTTTGTTGGTCCGGAGGGATCCCTTCCTTATCTTAAATT 549 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| ||| || || || ||||| ||||| || ||||||||||| Sbjct 548 TTTGCCTTGACATTGTCAATTGTGTCCGATCTCTCAATTTCTAAGGTAATAGTTTTACCA 489 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| |||||||||| |||| Sbjct 488 GTGAGTGTTTTCACAAATATTTACATT 462 >seq8584 Length=282 Score = 89.7 bits (98), Expect = 9e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||||||||| ||||| | ||||| |||| ||||| ||| || |||||||| || Sbjct 92 CCTTCTTTATCTTGGATTTTCGATTTTACATTTTCAATAGAATCTGATGACTCAACCTCG 33 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 ||||| || |||||||| || || ||||| || Sbjct 32 AGAGTAATTGTTTTACCCGTGAGGGTTTTAAC 1 >seq46463 Length=250 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||| | || | ||||| ||||| |||||| ||||| ||||| || | | Sbjct 125 CGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCA 184 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||||||||| || || |||| |||||| || || || |||||||| || Sbjct 185 TCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTG 244 Query 193266 TCTTG 193270 ||||| Sbjct 245 TCTTG 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896649239424960