Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq210337 122 2e-22
seq204555 118 2e-21
seq50902 118 2e-21
seq117562 114 2e-20
seq167623 113 8e-20
seq78792 111 3e-19
seq54724 109 1e-18
seq91578 105 1e-17
seq66861 105 1e-17
seq189123 98.7 2e-15
seq8584 89.7 9e-13
seq46463 86.0 1e-11
>seq210337
Length=1863
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||||||||||||||| || |||| ||||| || | ||| || || ||||||||
Sbjct 1495 ATACCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCA 1554
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || | ||| |||| |||||| ||||| || || |||| || ||||| |||
Sbjct 1555 GCCAAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAAGATCAATCGTTGCTGATCCGGA 1614
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || || || || || | || | || || || || || |||
Sbjct 1615 GGAATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCG 1674
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || |||||||| || || || || |||||||| || |||||||||||
Sbjct 1675 ACCTCGAGAGTTATGGTCTTTCCAGTAAGCGTTTTCACGAATATTTGCAT 1724
Score = 113 bits (124), Expect = 8e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||||||||| | |||||||||| || | || | |||||| || || || ||
Sbjct 1039 ATACCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCC 1098
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | ||| || | ||| || |||||||| || | |||||| ||||| |||
Sbjct 1099 GCAAGAGTACGTCCATCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGA 1158
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||| || || || || | || | ||| || |||||||| ||||
Sbjct 1159 GGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCA 1218
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || ||||| || || || || || ||||| ||||||||
Sbjct 1219 ACCTCAAGAGTAATGGTTTTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 1268
>seq204555
Length=10983
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || || || || | || | |||||| ||| || ||||| | ||| || | | |
Sbjct 1276 CGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCA 1335
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | |||||| || ||||| |||| ||||| || || || || || |||||||||
Sbjct 1336 TCTTCGAGTTGTTTCCCCGCAAAGATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTA 1395
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | |||| ||| ||| || || || ||||||||| | ||||||
Sbjct 1396 TCTTGAATCTTTGCCTTTACATTGTCAATCGTGTCTGAGCTCTCAACTTCCAAAGTTATG 1455
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || || || || ||||| |||||
Sbjct 1456 GTTTTACCGGTAAGGGTCTTAACGAATATCTGCAT 1490
>seq50902
Length=6384
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || || || || | || | |||||| ||| || ||||| | ||| || | | |
Sbjct 4570 CGGAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCA 4511
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | |||||||| ||||| |||| |||||||| || ||||| || |||||||||
Sbjct 4510 TCTTCGAGCTGTTTTCCCGCAAAGATTAGCCTCTGTTGGTCCGGAGGGATCCCTTCTTTA 4451
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || ||||| | ||| ||| ||||| || || || || ||||| ||
Sbjct 4450 TCTTGAATCTTCGTTTTCACATTGTCAATTGTATCCGAGCTTTCGACCTCAAGAGTGATG 4391
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || | || || || ||||| |||||
Sbjct 4390 GTTTTACCCGTCAAAGTCTTGACGAATATCTGCAT 4356
>seq117562
Length=2070
Score = 114 bits (126), Expect = 2e-20
Identities = 167/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| ||||||||||||||||| || |||| ||||| || | ||| || || |||
Sbjct 1238 ATTTGCATACCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTA 1179
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | || || | ||| |||| ||||| ||||| || || |||| || |||
Sbjct 1178 TAGTCAGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCGTTGCTGA 1119
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || ||||| || || || || || | || | || || || || ||
Sbjct 1118 TCCGGAGGAATCCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAG 1059
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || |||||||| || || || || || ||||| || |||||||||||
Sbjct 1058 CTCTCGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTCACGAATATTTGCAT 1003
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223
|||| ||| || |||||| ||||| | | ||| | | ||| || | || || ||
Sbjct 1655 GTAGACTCCTTCTGAATATTGTAGTCCGCAAGCGTACGACCATCCTCGAGCTGCTTACCA 1596
Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283
|| || || | |||||| ||||| ||||| || ||||| || ||||| || || | ||
Sbjct 1595 GCGAAGATGAGTCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCTTGGATCTTAGCCTTG 1536
Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343
| ||| || || || || ||||||||||||||| || ||||| || || || ||
Sbjct 1535 ACATTGTCTATTGTGTCTGAGCTCTCAACTTCTAGAGTAATGGTTTTCCCGGTGAGGGTC 1476
Query 193344 TTTACAAATATTTGCAT 193360
|| || ||||| |||||
Sbjct 1475 TTCACGAATATCTGCAT 1459
>seq167623
Length=7090
Score = 113 bits (124), Expect = 8e-20
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | |||||||||||| ||||| |||| ||| ||||| || || |||||||| ||
Sbjct 2547 TCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGGATTCCTTCCTTG 2488
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | ||| | ||| || |||||||| || || || || ||||||||
Sbjct 2487 TCTTGGATCTTCGCTTTGACATTGTCGATGGTATCGGATGATTCGACCTCGAGAGTTATC 2428
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||| ||||| || || || |||||
Sbjct 2427 GTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 2393
>seq78792
Length=14290
Score = 111 bits (122), Expect = 3e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193
|| ||||| ||||| || || | ||| | || | || || || || || ||||
Sbjct 11669 CCTCCTCTTAATCGCAGAACTAAATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 11610
Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253
| ||||| || || ||||||||||||||||| || || | || || || || ||
Sbjct 11609 AGTGTTCTTCCGTCTTCCAATTGTTTTCCGGCAAAGATCAAACGTTGCTGGTCCGGTGGA 11550
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313
|||||||| || ||||| || || | ||| | ||| || || || ||||| |||||
Sbjct 11549 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCCGAAGATTCAACC 11490
Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362
||||| ||||| || || || ||||| ||||| || || || |||||||
Sbjct 11489 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTT 11441
>seq54724
Length=7877
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || | |||| || | |||| |||||| |||||| ||||||
Sbjct 2104 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCG 2045
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | ||||| || || | ||| ||||||||||| || |||||||| || || |||
Sbjct 2044 GCCAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCCGGA 1985
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||| || || || |||| ||| | || || || || || ||||
Sbjct 1984 GGGATACCTTCTTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCA 1925
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || |||||||| || | || || ||||| || |||||
Sbjct 1924 ACCTCGAGGGTAATGGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 1875
Score = 104 bits (114), Expect = 4e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||| |||||||| || ||||||||||| ||||| ||||| |||||||| |||
Sbjct 1801 TCCTCAAGTTGCTTTCCGGCGAAGATTAATCTCTGCTGATCCGGAGGAATTCCTTCCTTA 1742
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | || | || || || || ||| |||||| || || || |||
Sbjct 1741 TCTTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCAACCTCGAGGGTAATA 1682
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || | || || ||||| || |||||
Sbjct 1681 GTTTTACCAGTCAAGGTCTTAACAAAGATCTGCAT 1647
>seq91578
Length=16840
Score = 105 bits (116), Expect = 1e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | ||||| || ||||| | ||| | || || || || |||||||
Sbjct 241 ACCACCACGGAGACGAAGGACGAGATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGC 300
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || | || || | |||||||||||| ||||| |||| |||||||| || ||
Sbjct 301 GAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAAATCAATCGTTGTTGATCCGGTGG 360
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|||||||| || ||||| || || | || | ||| || ||||| || || |||||
Sbjct 361 GATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCGATCGTATCCGATGATTCAAC 420
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || ||||| || || || ||||| ||||| || || || ||||| ||
Sbjct 421 CTCGAGCGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 471
>seq66861
Length=20397
Score = 105 bits (116), Expect = 1e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | |||||||||||| ||||| |||| || ||||| || || |||||||| ||
Sbjct 17414 TCTTCAAGTTGTTTTCCGGCGAAAATCAATCGTTGCTGATCCGGTGGGATTCCTTCCTTG 17355
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | || | ||| || |||||||| || ||||| || || |||||
Sbjct 17354 TCTTGGATCTTCGCCTTGACATTGTCGATCGTATCGGATGATTCAACCTCGAGCGTTATC 17295
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || ||||| ||||| || || || ||||| ||
Sbjct 17294 GTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 17257
>seq189123
Length=1720
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||| || || || || | ||| ||||| || ||||| || ||||| ||||||| |||
Sbjct 608 TGTTTACCAGCGAAGATGAGTCTTTGTTGGTCCGGAGGGATCCCTTCCTTATCTTAAATT 549
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | || | ||| ||| || || || ||||| ||||| || |||||||||||
Sbjct 548 TTTGCCTTGACATTGTCAATTGTGTCCGATCTCTCAATTTCTAAGGTAATAGTTTTACCA 489
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| || ||||| |||||||||| ||||
Sbjct 488 GTGAGTGTTTTCACAAATATTTACATT 462
>seq8584
Length=282
Score = 89.7 bits (98), Expect = 9e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316
|||||||||||||| ||||| | ||||| |||| ||||| ||| || |||||||| ||
Sbjct 92 CCTTCTTTATCTTGGATTTTCGATTTTACATTTTCAATAGAATCTGATGACTCAACCTCG 33
Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348
||||| || |||||||| || || ||||| ||
Sbjct 32 AGAGTAATTGTTTTACCCGTGAGGGTTTTAAC 1
>seq46463
Length=250
Score = 86.0 bits (94), Expect = 1e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| ||||| | || | ||||| ||||| |||||| ||||| ||||| || | |
Sbjct 125 CGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCA 184
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || |||||||||||||| || || |||| |||||| || || || |||||||| ||
Sbjct 185 TCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTG 244
Query 193266 TCTTG 193270
|||||
Sbjct 245 TCTTG 249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 896649239424960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |