Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq146431 161 1e-34 seq27195 141 1e-28 seq117562 113 7e-20 seq189123 100 4e-16 seq50902 100 4e-16 seq214945 93.3 6e-14 seq26661 93.3 6e-14 seq54724 91.5 2e-13 seq210337 89.7 8e-13 seq78792 84.2 3e-11 >seq146431 Length=15796 Score = 161 bits (178), Expect = 1e-34 Identities = 368/551 (67%), Gaps = 9/551 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| || |||||| |||||||||||| |||| || || ||||||||| || ||| Sbjct 4125 AAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAGGTT 4184 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | || | ||| || ||||| || ||||| ||| |||| || ||| Sbjct 4185 AATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAGAAG 4244 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || ||||| ||||| || ||||| |||| | || |||||||||| | || | | || Sbjct 4245 AAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGT---TTGA--GATC 4299 Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 | ||||| | ||||||| ||| | ||| || || | || | | Sbjct 4300 CATCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTG 4359 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 | || | || |||| | |||||| |||||| || ||||| |||| ||| | | || Sbjct 4360 CGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTAT 4419 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 |||| |||||||| || | || || || || ||||| | || || | | || |||| Sbjct 4420 ACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGG 4479 Query 18513 GATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 ||| | || | || |||| | | ||| || || || ||||||| Sbjct 4480 AGACTTGTACATCTGACAT-GAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGAT 4538 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | ||||| || || | || | ||| ||||| || ||| || |||||||| | | Sbjct 4539 GCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCC 4598 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || ||| | |||| ||||||||| |||||||| | ||||| || |||| |||||| Sbjct 4599 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 4658 Query 18692 TGTTTGTACAT 18702 | |||||||| Sbjct 4659 TTCTTGTACAT 4669 >seq27195 Length=13093 Score = 141 bits (156), Expect = 1e-28 Identities = 362/549 (66%), Gaps = 11/549 (2%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || || ||||| |||||| ||||| |||| || ||||| ||||| || |||||| Sbjct 9231 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC 9172 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | |||| |||||| ||||| || ||||| ||| |||| || ||||| Sbjct 9171 CCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAG 9112 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA--CTG-TATTTATTGCTC 18334 ||||| || ||||||||||| || | | || |||||| ||| ||| || || | Sbjct 9111 ATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCATCG--- 9055 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 |||||| | ||||||| ||| | || || || | || || || Sbjct 9054 ---ATCCATGTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCG 8998 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || | || |||| | |||||| |||||| || || || || | | | | |||| Sbjct 8997 CGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATAC 8938 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 || |||||||| || | || || || ||||| || | || || | | || || | Sbjct 8937 ATCTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAG 8878 Query 18515 TATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||| | || | || |||| | | |||||| ||| || ||||||| | Sbjct 8877 ACTTGTACATCTGACAT-GAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGC 8819 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 ||||| || || | || | ||| ||||| || ||| || |||||||| | ||| Sbjct 8818 GGCGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTCTCCCA 8759 Query 18634 TTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 ||| | |||| ||||||||| |||||||| | ||||| || |||| |||||| | Sbjct 8758 GTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTT 8699 Query 18694 TTTGTACAT 18702 |||||||| Sbjct 8698 CTTGTACAT 8690 >seq117562 Length=2070 Score = 113 bits (124), Expect = 7e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || || |||||||| || || || || || Sbjct 1686 AATGCAAATCTTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTC 1745 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| || || || ||| || || || || ||||| || ||||| || || Sbjct 1746 GGACACTATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCA 1805 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||| | || | |||||||||||| ||||||||| | || ||| |||| || || Sbjct 1806 GCAGAGACTTATCTTTGCCGGTAAGCAACTCGAAGATGGACGCACCTTAGCAGACTACAA 1865 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| |||||| |||| |||||||| || Sbjct 1866 TATTCAGAAAGAGTCGACTCTTCATTTGGT 1895 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| ||||| || ||||| | ||||||||| || Sbjct 1231 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAAGTCGAAAGCTCA 1290 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| ||| ||| || || || || ||||| || ||||| || || Sbjct 1291 GATACTATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1350 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | |||||||||||||| ||||| || ||| | | ||||| || Sbjct 1351 CAAAGACTTATCTTCGCCGGTAAGCAGCTTGAAGACGGAAGGACTCTGGCGGATTACAAC 1410 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || || ||| | ||| | | | ||||| ||| Sbjct 1411 ATCCAGAAGGAGTCTACACTCCATCTTGTGCTTCGTCTCAGAGGTGGT 1458 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||| | |||||||| || || || | || ||||| ||| Sbjct 1003 ATGCAAATATTCGTGAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1062 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || || || || ||||| || ||||| || || Sbjct 1063 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 1122 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | |||||||| ||||| |||||| | | || || | || ||||| Sbjct 1123 CAACGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCTGACTATAAC 1182 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| |||| | || || || | |||| ||||| ||| Sbjct 1183 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGGT 1230 >seq189123 Length=1720 Score = 100 bits (110), Expect = 4e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATT 155880 |||| |||||||| | |||||| | ||||| ||||||||||| |||||| | || ||| | Sbjct 462 AATGTAAATATTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAATTGAGAGA-T 520 Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 | || | ||| || || || ||||| ||||||| ||||| || ||||| || | Sbjct 521 CGGACACAATTGACAATGTCAAGGCAAAAATTTAAGATAAGGAAGGGATCCCTCCGGACC 580 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 |||||||| | || | || ||||| |||||| |||| Sbjct 581 AACAAAGACTCATCTTCGCTGGTAAACAGCTCAAAGA 617 >seq50902 Length=6384 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || || ||||| || ||||| || || | || |||||| || Sbjct 4356 ATGCAGATATTCGTCAAGACTTTGACGGGTAAAACCATCACTCTTGAGGTCGAAAGCTCG 4415 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||||| || || |||||||||||||| || ||||| || ||| Sbjct 4416 GATACAATTGACAATGTGAAAACGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAA 4475 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || || |||||||||||| | || ||| | || || || Sbjct 4476 CAGAGGCTAATCTTTGCGGGAAAACAGCTCGAAGATGGTCGGACATTAGCGGACTACAAC 4535 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 4536 ATTCAGAAAGAGTCCACTCTTCA 4558 >seq214945 Length=15579 Score = 93.3 bits (102), Expect = 6e-14 Identities = 117/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 155894 AAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGAT 155953 |||||| || || || ||| | |||||||| | ||| |||| ||||||||| |||| Sbjct 3627 AAACGTCAAGTTGAAGATCCAAAAGAAAGAAGGAGTCCCTTCAGACCAACAAAGACTGAT 3568 Query 155954 TTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-- 156011 | ||||||||| |||||||||||| | | |||||| | ||||| | | ||||||| Sbjct 3567 CTTTGCCGGTAAACAGCTCGAAGATGGCCGTACTTTAGCTGATTACA--ACATCCAAAAG 3510 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || | || || || || || | || |||||||| ||| Sbjct 3509 GAATCAACTCTCCACTTGGTTCTCAGGTTAAGAGGAGGT 3471 >seq26661 Length=2801 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || ||||| || ||||| ||| || Sbjct 1402 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACCATTACTTTGGAAGTTGAAAGCTCA 1461 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| || || || || || ||||| || || || || || Sbjct 1462 GACACAATTGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCGGATCAG 1521 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| ||||| || ||||| | |||| || | || || || Sbjct 1522 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGAACCTTGGCGGACTACAAC 1581 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| ||||||||||| Sbjct 1582 ATTCAGAAGGAGTCGACGCTTCAT 1605 >seq54724 Length=7877 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || |||||||| ||||||||||| | || || || |||| Sbjct 1647 ATGCAGATCTTTGTTAAGACCTTGACTGGTAAAACTATTACCCTCGAGGTTGAGAGTTCT 1706 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| || |||||||| ||||| || ||||| || || Sbjct 1707 GACACCATCGACAACGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCTCCGGATCAG 1766 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || ||||| || | ||||| ||||| || || || Sbjct 1767 CAGAGATTAATCTTCGCCGGAAAGCAACTTGAGGA 1801 >seq210337 Length=1863 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||| ||||| || || || | || || || || Sbjct 1496 ATGCAGATCTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTTGAGGTTGAGAGCTCA 1437 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || ||| || || || || ||||| || ||||| || || Sbjct 1436 GATACTATTGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 1377 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | |||||||||||||| |||||| || ||| | | ||||| ||| Sbjct 1376 CAAAGACTTATCTTCGCCGGTAAGCAGCTTGAAGATGGAAGGACTCTGGCTGATTACAAT 1317 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || || || | ||||| Sbjct 1316 ATCCAGAAAGAGTCCACTCTCCACCTTGTGTT 1285 >seq78792 Length=14290 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155821 AAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880 ||||||| || || | ||||| | || || || || || || |||| || ||| || Sbjct 11441 AAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTT 11500 Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 | || | || || |||||| || || ||||| || ||||| || || || || | Sbjct 11501 CGGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATTCCACCGGACC 11560 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATA 156000 | ||| | ||||| | |||||| || || | ||||| ||||| | | ||||| | Sbjct 11561 AGCAACGTTTGATCTTTGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTACA 11620 Query 156001 ATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | || || || |||||||||||||||| | |||||||||| || Sbjct 11621 ACATCCAGAAGGAATCGACGCTTCATTTAGTTCTGCGATTAAGAGGAGG 11669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729427291364800