Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021344.2
Length=176227
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 205 1e-47
seq26767 158 1e-33
seq244327 113 5e-20
>seq249645
Length=476466
Score = 205 bits (226), Expect = 1e-47
Identities = 295/415 (71%), Gaps = 6/415 (1%)
Strand=Plus/Plus
Query 41652 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 41711
|||| ||||| || ||| | ||||||||||| || ||||||||||| | |||||
Sbjct 264557 TACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTCT 264616
Query 41712 TGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGA 41768
| || |||| |||||| | | ||| | || || ||| || || |||||
Sbjct 264617 TAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCC---ACCACTAGCGCCATCGTAC 264673
Query 41769 AGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGTT 41828
||| | ||||| |||||||||||||| | ||||| || | ||| || || | |||
Sbjct 264674 GCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTA 264733
Query 41829 CTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATTC 41888
|||||||| ||||||||| ||||| ||| || || || | ||| | |
Sbjct 264734 GCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCC 264793
Query 41889 AGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTATT 41948
| || || ||||||| ||| ||||||||||| || ||||| |||||||| ||||||| |
Sbjct 264794 AAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCT 264853
Query 41949 ATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTG 42008
| || | |||||||| |||||||| | ||||| || ||||| ||| |||||||
Sbjct 264854 ACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTG 264913
Query 42009 AAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTA 42063
|| |||||||| ||||||| |||| || ||||||||| | ||| | ||||||
Sbjct 264914 AAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAACGATGTA 264968
Score = 93.3 bits (102), Expect = 5e-14
Identities = 118/161 (73%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 43937 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 43996
|||||||| || || ||||||| || ||||| ||||||||||||||||||||| |
Sbjct 268767 TATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCT 268826
Query 43997 TTTACGTTCAACTTTGCCGAACAGGGCAA---GATGGAAGGTAACGCAAAGATCATGCGT 44053
| |||| ||||| | || |||| |||||||||||| || || |||||
Sbjct 268827 TGCTCGTTTGCGTTTGCTG---AGCGCAAATTGATGGAAGGTAATGCCAAAATCATTAAG 268883
Query 44054 CTGATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCA 44094
|| || || ||||||||||| || ||| || |||||| ||
Sbjct 268884 CTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCA 268924
>seq26767
Length=1149
Score = 158 bits (174), Expect = 1e-33
Identities = 287/420 (68%), Gaps = 0/420 (0%)
Strand=Plus/Minus
Query 41648 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41707
|| ||||| || || |||||| |||| || | |||||||| || || ||| | ||
Sbjct 446 TCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGT 387
Query 41708 GTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTG 41767
|| | ||||||| | |||| || | |||| | || ||| || | | || ||
Sbjct 386 GTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTA 327
Query 41768 AAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGT 41827
|| ||| |||| ||||| || || || ||| | || || ||| | ||||| || | |||
Sbjct 326 AAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGT 267
Query 41828 TCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATT 41887
| || | ||| |||||| ||||||| || || || || | |||||| ||
Sbjct 266 AGTCCTATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTTTATAAACATTTT 207
Query 41888 CAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTAT 41947
|| | || || ||||||||||| ||||| || ||| | ||||| || ||||| | | |
Sbjct 206 CAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTT 147
Query 41948 TATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTT 42007
||||| || |||||||| ||| |||||| | | ||| | ||||| || | || ||
Sbjct 146 TATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATT 87
Query 42008 GAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAA 42067
||| | || | | |||||| | ||||||| ||||| |||| | ||||||||| ||
Sbjct 86 GAAGAAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAATTGATGTATCAA 27
>seq244327
Length=1302
Score = 113 bits (124), Expect = 5e-20
Identities = 206/302 (68%), Gaps = 0/302 (0%)
Strand=Plus/Minus
Query 43395 TTGCCCGATATGAAGAACAAAAACACAGTGTATTTGAAAAGCTGACTGAAAAACAACTGT 43454
||||||||||||| | |||||| | | | | |||||||| | | |||||||||||| |
Sbjct 1149 TTGCCCGATATGATCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCT 1090
Query 43455 CATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATTGACCGTATGCAGTATGCGAAAA 43514
| || || ||| |||| |||||| | ||||| || || | || | | | ||
Sbjct 1089 CTTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAAAATT 1030
Query 43515 TGCCGGAACATGAAAAAATCATTTTCGATTCTAACCTGCAATATCAAACCCTACTGGATA 43574
| || |||||||||||| ||||| | ||| | |||||||||| || | ||
Sbjct 1029 TACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACT 970
Query 43575 CCATTCAGGGACGCGGCCCTAACCTTGCATTTCTCCCGATTGCCTCTGATGTATCAATGG 43634
| ||||| ||| | | |||||| |||| ||||| || ||| ||| | | | |
Sbjct 969 CTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAG 910
Query 43635 AAACGTGGATCGAAACATGGGCGTTCAGTGAAACAATTCACAGTCGCAGTTATACGCACA 43694
|||| ||||| ||||||||| | || ||||| |||||| || |||||| || |
Sbjct 909 AAACCTGGATTGAAACATGGTCTTTTTCGGAAACTATTCACTCACGTTCTTATACTCATA 850
Query 43695 TT 43696
||
Sbjct 849 TT 848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561915116014560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |