Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq249645 205 1e-47 seq26767 158 1e-33 seq244327 113 5e-20 >seq249645 Length=476466 Score = 205 bits (226), Expect = 1e-47 Identities = 295/415 (71%), Gaps = 6/415 (1%) Strand=Plus/Plus Query 41652 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 41711 |||| ||||| || ||| | ||||||||||| || ||||||||||| | ||||| Sbjct 264557 TACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTCT 264616 Query 41712 TGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGA 41768 | || |||| |||||| | | ||| | || || ||| || || ||||| Sbjct 264617 TAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCC---ACCACTAGCGCCATCGTAC 264673 Query 41769 AGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGTT 41828 ||| | ||||| |||||||||||||| | ||||| || | ||| || || | ||| Sbjct 264674 GCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTA 264733 Query 41829 CTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATTC 41888 |||||||| ||||||||| ||||| ||| || || || | ||| | | Sbjct 264734 GCCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCC 264793 Query 41889 AGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTATT 41948 | || || ||||||| ||| ||||||||||| || ||||| |||||||| ||||||| | Sbjct 264794 AAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCT 264853 Query 41949 ATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTG 42008 | || | |||||||| |||||||| | ||||| || ||||| ||| ||||||| Sbjct 264854 ACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTG 264913 Query 42009 AAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTA 42063 || |||||||| ||||||| |||| || ||||||||| | ||| | |||||| Sbjct 264914 AAGACAACCGTGTCCGTCATATGGACTACGGCGTACAGTTAAACAAAACGATGTA 264968 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 43937 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 43996 |||||||| || || ||||||| || ||||| ||||||||||||||||||||| | Sbjct 268767 TATCTGTGCATCATGGCGGTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCT 268826 Query 43997 TTTACGTTCAACTTTGCCGAACAGGGCAA---GATGGAAGGTAACGCAAAGATCATGCGT 44053 | |||| ||||| | || |||| |||||||||||| || || ||||| Sbjct 268827 TGCTCGTTTGCGTTTGCTG---AGCGCAAATTGATGGAAGGTAATGCCAAAATCATTAAG 268883 Query 44054 CTGATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCA 44094 || || || ||||||||||| || ||| || |||||| || Sbjct 268884 CTCATCGCTCGTGATGAAGCGCTGCATTTGACAGGTACGCA 268924 >seq26767 Length=1149 Score = 158 bits (174), Expect = 1e-33 Identities = 287/420 (68%), Gaps = 0/420 (0%) Strand=Plus/Minus Query 41648 TCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGC 41707 || ||||| || || |||||| |||| || | |||||||| || || ||| | || Sbjct 446 TCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGT 387 Query 41708 GTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTG 41767 || | ||||||| | |||| || | |||| | || ||| || | | || || Sbjct 386 GTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTA 327 Query 41768 AAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGT 41827 || ||| |||| ||||| || || || ||| | || || ||| | ||||| || | ||| Sbjct 326 AAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGT 267 Query 41828 TCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATT 41887 | || | ||| |||||| ||||||| || || || || | |||||| || Sbjct 266 AGTCCTATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTTTATAAACATTTT 207 Query 41888 CAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTAT 41947 || | || || ||||||||||| ||||| || ||| | ||||| || ||||| | | | Sbjct 206 CAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTT 147 Query 41948 TATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTT 42007 ||||| || |||||||| ||| |||||| | | ||| | ||||| || | || || Sbjct 146 TATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATT 87 Query 42008 GAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAA 42067 ||| | || | | |||||| | ||||||| ||||| |||| | ||||||||| || Sbjct 86 GAAGAAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAATTGATGTATCAA 27 >seq244327 Length=1302 Score = 113 bits (124), Expect = 5e-20 Identities = 206/302 (68%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 43395 TTGCCCGATATGAAGAACAAAAACACAGTGTATTTGAAAAGCTGACTGAAAAACAACTGT 43454 ||||||||||||| | |||||| | | | | |||||||| | | |||||||||||| | Sbjct 1149 TTGCCCGATATGATCAGCAAAAATATAATATTTTTGAAAAATTAATTGAAAAACAACTCT 1090 Query 43455 CATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATTGACCGTATGCAGTATGCGAAAA 43514 | || || ||| |||| |||||| | ||||| || || | || | | | || Sbjct 1089 CTTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAAAATT 1030 Query 43515 TGCCGGAACATGAAAAAATCATTTTCGATTCTAACCTGCAATATCAAACCCTACTGGATA 43574 | || |||||||||||| ||||| | ||| | |||||||||| || | || Sbjct 1029 TACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACT 970 Query 43575 CCATTCAGGGACGCGGCCCTAACCTTGCATTTCTCCCGATTGCCTCTGATGTATCAATGG 43634 | ||||| ||| | | |||||| |||| ||||| || ||| ||| | | | | Sbjct 969 CTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAG 910 Query 43635 AAACGTGGATCGAAACATGGGCGTTCAGTGAAACAATTCACAGTCGCAGTTATACGCACA 43694 |||| ||||| ||||||||| | || ||||| |||||| || |||||| || | Sbjct 909 AAACCTGGATTGAAACATGGTCTTTTTCGGAAACTATTCACTCACGTTCTTATACTCATA 850 Query 43695 TT 43696 || Sbjct 849 TT 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561915116014560