Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021529.2
Length=247511
Score E
Sequences producing significant alignments: (Bits) Value
seq249645 122 1e-22
>seq249645
Length=476466
Score = 122 bits (134), Expect = 1e-22
Identities = 266/394 (68%), Gaps = 16/394 (4%)
Strand=Plus/Plus
Query 63682 TACCAACCCCGATCATGGCAGGTGTTCGTACGCCAACTCGACAATTTAGCTCATGTGTTA 63741
||||||| || |||||| ||||||| ||||||||| | || || |||||||| || ||
Sbjct 264557 TACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGTGCGTCT 264616
Query 63742 AAATCGAATCTGGCGACTCTCTGCATTCAGTCAACAA----AGTAGCCGAAGCAATCATC 63797
|||||||| ||| || | | || ||||| | |||| || ||| |
Sbjct 264617 TAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGC----GCCATCGTA 264672
Query 63798 AACTATATCAGTAAACGTGCTGGTATCGGTGTTAATGGCGGTGCTATTCGTGC---TGAA 63854
|||| | | |||||||||||||| | || | ||| ||| ||||| ||
Sbjct 264673 CGCTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGT 264732
Query 63855 GGCTCGGTTGTTCGAGCAGGTGAAATTCGACACACTGG-TGTAATCCCATTCTGGAAACA 63913
|| | | | || | |||||| | || ||||| |||| ||| || | |||
Sbjct 264733 AGCCC---TATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTT-TATAAATT 264788
Query 63914 CTTTCAGACTGCTGTGAAGTCATGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGCT 63973
|| || || || || || | || ||||||||||| || ||||| |||||||| ||| |
Sbjct 264789 GTTCCAAACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTT 264848
Query 63974 AACTTACCCGATTTGGCATTTAGAAGTTGAAAAACTTTTGGTGCTGAAGAACAACAAAGG 64033
||||| | ||||||||||||||||| | | |||| || || || ||| ||
Sbjct 264849 GTTCTACCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGG 264908
Query 64034 CGTTGAAGAAAACCGTATTCGTCATCTTGACTAC 64067
|||||||| |||||| | |||||| | ||||||
Sbjct 264909 TGTTGAAGACAACCGTGTCCGTCATATGGACTAC 264942
Score = 95.1 bits (104), Expect = 2e-14
Identities = 253/379 (67%), Gaps = 16/379 (4%)
Strand=Plus/Plus
Query 64776 CCAATCGATTGGTACAATAAAAATGTTGATAAGCT-TGTAAAACCGCATTACAATTTAGA 64834
|| || ||| |||||| ||| | | |||||| | || || || |||| ||||||
Sbjct 265672 CCGATTGATACGTACAAAAAAGACTTGGATAAGATCTGCCAAGAGCCACTACA-TTTAGA 265730
Query 64835 CTGGGAATCACTACGAGAAGACGTGATTCGCTATGGTATGCGCAACGATACAACATCTGC 64894
|||||| | ||||| | || | | | | ||| |||||||| ||| | | ||
Sbjct 265731 TTGGGAAACGCTACGTGGCGAGATCACTGAGCACGGTCTGCGCAACTCTACCCTAACCGC 265790
Query 64895 ATTCATGCCGTGTGAAAGTAGTTCA---CAAATCAGTAACAGTACAAATGGCATCGAGCC 64951
|| ||||||| ||||| ||| || ||| || || || || ||||||||
Sbjct 265791 CTTGATGCCGTCTGAAACC---TCAAGTCAGATCGCCAATGCGACCAACGGTATCGAGCC 265847
Query 64952 GCCACGCGATCTAGTATCGA-CTAAGCAGTCAAAAGATGGTGTATTCAACCAAGTAGTTC 65010
||||| | ||| || || | | ||||| ||||||||||| | || || ||||| || |
Sbjct 265848 ACCACGTGGTCTGGTCTCTATCAAAGCA-TCAAAAGATGGCATCTTAAAGCAAGTCGTGC 265906
Query 65011 CTGAAGTTGATTTGCTGAAAGATGAATACGGTCTAGCGTGGAAAGTTTGTGCGAAAGACA 65070
|||| |||| ||| |||||| | |||| ||| ||| || | ||| |||
Sbjct 265907 CTGAGATTGACAAGCTAAAAGATCAGTACGAGCTACTATGGCAAAT---GCCGA---ACA 265960
Query 65071 ACTATGGTTATCTGACTCTAGTTGCAATTATGCAGAAATTCGTTGACCAGAGCATCTCCG 65130
| | ||||| || | || || || || ||||| |||||||| || || || ||||| |
Sbjct 265961 ATGACGGTTACCTAAAGCTGGTCGCTATCATGCAAAAATTCGTCGATCAAAGTATCTCTG 266020
Query 65131 CTAATGAATACCACGATCC 65149
| ||| || |||||||
Sbjct 266021 CCAATACTAACTACGATCC 266039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 789261952784480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |