Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq28607 574 5e-159 seq180749 158 1e-33 seq218717 134 2e-26 >seq28607 Length=83266 Score = 574 bits (636), Expect = 5e-159 Identities = 700/952 (74%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 157622 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 157681 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 1460 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1401 Query 157682 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 157741 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 1400 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1341 Query 157742 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 157801 || | || || ||||| || || || ||||| || | || |||| || |||||| Sbjct 1340 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1281 Query 157802 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 157861 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 1280 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1221 Query 157862 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAG 157921 |||| |||| | || | ||||| | ||||| | | || ||||| |||||| Sbjct 1220 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1161 Query 157922 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCA 157981 ||||||||| | |||| | |||||||| || ||||| ||| |||||||| ||||| Sbjct 1160 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1101 Query 157982 GTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGAT 158041 || || || ||| ||||||| ||| | |||| || | |||||||| ||| || ||| Sbjct 1100 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 1041 Query 158042 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 158101 | ||||||||| || |||||||||||||| |||| ||| |||||||||| || || ||| Sbjct 1040 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 981 Query 158102 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158161 ||||| ||||||||||| || || ||| | ||||| ||||| |||||||| || || || Sbjct 980 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 921 Query 158162 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAAC 158220 || ||||||||| || | || |||| || | | || | ||||| || |||| Sbjct 920 TTTAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAA 862 Query 158221 AGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGC 158280 || || || | |||||||| ||||| ||||| ||||| || || ||||| || || Sbjct 861 TGAATCTGCTAATGAAGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGC 802 Query 158281 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTC 158340 || ||||| || || || || |||||||||||||| ||| |||||||| || ||||| Sbjct 801 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 742 Query 158341 CTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGT 158400 || || |||||| | || || ||||| || || || || ||||| || || | || | Sbjct 741 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTAT 682 Query 158401 CTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCA 158460 ||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| Sbjct 681 TAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCA 622 Query 158461 GGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGT 158520 || ||||| | || || ||||| ||| | | ||||| ||| |||||||||||||| Sbjct 621 AGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 562 Query 158521 TATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAG 158572 ||||||||| ||||| || ||||||||||| || ||||| ||||||| |||| Sbjct 561 TATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510 Score = 526 bits (582), Expect = 2e-144 Identities = 720/1006 (72%), Gaps = 0/1006 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || ||||| |||||||| || |||||||| ||| | || || Sbjct 32416 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32475 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 32476 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32535 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || || || || | |||||||||||| | || ||| || ||| | || || || || Sbjct 32536 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTT 32595 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 ||||| |||||| | | | | |||||| | | |||| ||||||||||| | || Sbjct 32596 TCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32655 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || |||| || ||||| ||| | || || | ||| |||||| || |||||||| Sbjct 32656 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGC 32715 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTATC 159665 || ||||| |||| ||||| ||| | ||||| |||||||| || || | || | Sbjct 32716 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTG 32775 Query 159666 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTC 159725 || ||||| ||||| || || ||||||||||| |||||||||||||| |||||||| Sbjct 32776 CGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTA 32835 Query 159726 ATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATC 159785 || || ||| ||||||| || ||||||| || || || ||||| || || || || Sbjct 32836 ATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATA 32895 Query 159786 TTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATG 159845 ||| ||||| | | || | ||||| ||||| || ||||| || || || || |||||| Sbjct 32896 TTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 32955 Query 159846 ATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTA 159905 |||||||| || ||| |||| || | || || || | || || ||||| | ||||||| Sbjct 32956 ATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTA 33015 Query 159906 GAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACT 159965 || || || | | ||||||||| || |||||||| || || ||| | ||||| Sbjct 33016 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 33075 Query 159966 CAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 160025 |||| || || ||||| || |||||||| || |||||||| ||||| || ||||| || Sbjct 33076 CAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGG 33135 Query 160026 ATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGT 160085 |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | ||| Sbjct 33136 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGT 33195 Query 160086 CTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTC 160145 | |||| || |||| | | ||||| ||| | || || ||||| || || ||| Sbjct 33196 TTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTC 33255 Query 160146 GTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAAC 160205 || || || ||| | ||||| |||||||| ||||||||||| ||||| || ||||| Sbjct 33256 GTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAAT 33315 Query 160206 ATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAAC 160265 || || || |||||||| | ||||| ||| |||| || ||||| || ||||||||| Sbjct 33316 ATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 33375 Query 160266 TTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||| ||||| || || || | || | || ||||| ||||||| Sbjct 33376 CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33421 >seq180749 Length=15184 Score = 158 bits (174), Expect = 1e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 158729 GTCCAATGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATT 158788 ||| |||| ||||| || ||| | || |||||||| |||||||||||| | ||| | Sbjct 10934 GTCGAATGCGAAGACGACGTTTACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTG 10993 Query 158789 AATTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACT 158848 ||||||||| || ||||| | || ||| |||||||||||| || ||||||||| Sbjct 10994 CCTTACTCTTGCCGCTCTGGTTCATGTTCTAGCTGTGCAGGTAAAGTTAAGTCTGGAACT 11053 Query 158849 GTTGATCAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTT 158908 ||||||||| ||| ||| ||| | || |||||||||||||| | |||||||||||| Sbjct 11054 GTTGATCAGTCTGACCAGAGTTTCCTCGATGATGATCAGATTGCTGAAGGATTTGTTCTC 11113 Query 158909 ACGTGTGTAGCATATCCAACATCTGAT 158935 || |||| || ||||| || |||||| Sbjct 11114 ACTTGTGCTGCTTATCCTACCTCTGAT 11140 >seq218717 Length=448 Score = 134 bits (148), Expect = 2e-26 Identities = 162/219 (74%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 || ||| | ||||||||||||||| | || | |||||||| || ||||| ||| Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167 Query 157967 GCATATTCTGCTCCAGTC-GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 158025 |||||||| ||||| || || || || || ||| ||| | | ||||| | ||||| Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107 Query 158026 AGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 158085 ||| ||| | ||| ||||||||| || |||||| ||||||| |||| || |||| Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47 Query 158086 ATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCA 158124 |||||| || || |||||||| ||||||||||| || || Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546542637572960