Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 668 0.0
seq218717 136 4e-27
seq134954 98.7 1e-15
seq207321 86.0 7e-12
>seq28607
Length=83266
Score = 668 bits (740), Expect = 0.0
Identities = 749/997 (75%), Gaps = 6/997 (1%)
Strand=Plus/Minus
Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897
||| ||| ||||| | ||| ||| | || ||||| || | || ||||| ||||| |
Sbjct 1503 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 1444
Query 150898 GATGATTCCAACTCTGTTGGCAGCAAC--CATTTGCTTCATCGTGGCATTCATCGCTGCT 150955
|||||| || || | ||| | ||||| | || || || | |||||||| ||||||
Sbjct 1443 GATGATCCCTACCTTATTGACCGCAACTTCCGTT--TTTATTATCGCATTCATTGCTGCT 1386
Query 150956 CCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAAC 151015
|| || || || || ||||| || |||||||| ||| |||| ||||| | ||||| |||
Sbjct 1385 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 1326
Query 151016 AACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCC 151075
|| || || || ||||| || ||||| ||||| ||||| ||| |||| || || ||
Sbjct 1325 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCG 1266
Query 151076 ATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 151135
||||||||||| || || | ||||||||||| |||||||| ||||||| |||| ||
Sbjct 1265 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 1206
Query 151136 GTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTAC 151195
|| | ||||| | ||||| | | ||| |||||||||||||||||||| || |
Sbjct 1205 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1146
Query 151196 CGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAG 151254
|| ||||||||||||| ||||| ||| |||||||| || ||||| ||||| ||||| |
Sbjct 1145 CGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAAC 1087
Query 151255 TGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGG 151314
||| || ||| | |||| || | |||||||| ||| ||||||| ||||| || ||
Sbjct 1086 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 1027
Query 151315 TATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCA 151374
|| ||||| || ||||||| ||| |||| ||||| || |||||||||||||| |||||
Sbjct 1026 AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA 967
Query 151375 CCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCA 151434
||| || || ||| | ||||| |||||||| ||||| || || || || || |||||
Sbjct 966 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 907
Query 151435 CGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTA 151494
||||| |||| |||||| || | | || ||||| ||||| || || || |
Sbjct 906 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 847
Query 151495 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTT 151554
|||||||| ||||| ||||||||||| || |||||||| || || || || ||||| ||
Sbjct 846 AGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTT 787
Query 151555 TGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 151614
||| || | ||||||||||| ||| ||||||||||| ||||| | || |||||| |
Sbjct 786 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 727
Query 151615 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATT 151674
|| || ||||| || || ||||| ||||| ||||| | ||| | ||||||||||| ||
Sbjct 726 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTT 667
Query 151675 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAA 151734
|||||| || |||||||| |||||||| || | | ||| |||| || || | ||
Sbjct 666 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 607
Query 151735 CACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAA 151794
|| ||||| || || | |||||||| || ||||||||||||||||| || |||||
Sbjct 606 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 547
Query 151795 TGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 151831
|||||||||||||||||| ||||| ||||||| ||||
Sbjct 546 TGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
Score = 627 bits (694), Expect = 9e-175
Identities = 749/1014 (74%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418
|||||| | ||||||||||| | ||| ||||| ||||||||||| |||||||||||
Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463
Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478
|| | || ||||| ||| ||| | ||| | || |||||| | || || || || ||
Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523
Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538
| || ||||||||||| || ||||| ||||||||| | || || || ||| |
Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583
Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598
|| || || ||||| ||||| || || | | | |||||| | || | || ||||||
Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643
Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658
||||| || ||||| ||||| | ||| ||| | || || || |||||||||||
Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703
Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 152717
|| |||||||| |||||||| |||| ||||| ||| | || || |||||||| || ||
Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763
Query 152718 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 152777
|| || | | || || || ||||| || || ||||||||||| || |||||||||||
Sbjct 32764 TCCGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32822
Query 152778 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 152837
| ||||| || || || || ||||||||||| ||||||| || || || ||| ||
Sbjct 32823 TTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32882
Query 152838 GGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAA 152897
|| || || || || |||||| | ||||| | ||||| || || || |||||||||||
Sbjct 32883 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32942
Query 152898 TCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCA 152957
|| |||||||||||||| || || ||| | |||| | || |||| | || |||||
Sbjct 32943 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCA 33002
Query 152958 TGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGC 153017
||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| ||
Sbjct 33003 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33062
Query 153018 TTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 153077
||| || ||||||| ||||| || ||||| ||||| || |||||||| || |||||
Sbjct 33063 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33122
Query 153078 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 153137
|| || ||||| |||||||| ||||||||| ||| | |||||||||||| | |||||
Sbjct 33123 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33182
Query 153138 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 153197
||| || | ||| | |||| | || ||||| | | || || ||| | || || ||
Sbjct 33183 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 33242
Query 153198 TGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 153257
||| || || || || || || |||||| | || | |||||||| ||||||||||| ||
Sbjct 33243 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33302
Query 153258 CTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCA 153317
|||||| || ||||| ||||| ||||||||| ||||||||||| |||| || || ||
Sbjct 33303 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33362
Query 153318 ACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371
|||||||| ||| | | |||||||| ||||| | ||||| || ||||||||
Sbjct 33363 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416
>seq218717
Length=448
Score = 136 bits (150), Expect = 4e-27
Identities = 163/220 (74%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 151165 TTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGT 151224
||| ||| |||||||||||||||| || | ||||||||||||| ||||| ||
Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGT 168
Query 151225 TGCATACTCTGCTCCAGTT-GCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283
|||||| || ||||| ||| || ||||| | || || ||| | | ||||| | ||||
Sbjct 167 TGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTC 108
Query 151284 AAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTG 151343
|||| ||| | | ||| ||||| || || || ||| | || ||||||| || |||
Sbjct 107 AAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTG 48
Query 151344 TCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCA 151383
| ||||| || |||||||||||||| |||||||| || ||
Sbjct 47 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8
>seq134954
Length=2254
Score = 98.7 bits (108), Expect = 1e-15
Identities = 80/97 (82%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 151993 AAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTT 152052
|||||||||| |||||||||||||| ||||| || ||||||||| || |||||||
Sbjct 107 AAGATGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTT 48
Query 152053 GTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGAT 152089
| | |||||||| |||||| |||| |||||||||||
Sbjct 47 GCAGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGAT 11
>seq207321
Length=8752
Score = 86.0 bits (94), Expect = 7e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048
|| ||||| ||| ||| || | || || ||||| ||| ||| | ||| || |||
Sbjct 6156 TGCGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGATTTGCCTTAC 6215
Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108
|| || ||| ||||| | || || || || ||||| | || ||| |||||
Sbjct 6216 TCATGCCGTTCTGGTTCTTGCTCTAGCTGCGCCGGTAAACTCGTCTCTGGCTTCGTTGAC 6275
Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168
||| |||||| |||||||| || ||||| || ||| ||| | || | ||||||
Sbjct 6276 CAGTCCGACCAAAGCTTCTTGGACGACGACCAAATGGAAGAAGGCTATGTCTTAACCTGT 6335
Query 152169 GTTGCATATCCAACTTCTGATGTCACC 152195
|| || || ||||||||||||||||||
Sbjct 6336 GTCGCTTACCCAACTTCTGATGTCACC 6362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547786468816160
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