Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq28607 668 0.0 seq218717 136 4e-27 seq134954 98.7 1e-15 seq207321 86.0 7e-12 >seq28607 Length=83266 Score = 668 bits (740), Expect = 0.0 Identities = 749/997 (75%), Gaps = 6/997 (1%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| ||||| | ||| ||| | || ||||| || | || ||||| ||||| | Sbjct 1503 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 1444 Query 150898 GATGATTCCAACTCTGTTGGCAGCAAC--CATTTGCTTCATCGTGGCATTCATCGCTGCT 150955 |||||| || || | ||| | ||||| | || || || | |||||||| |||||| Sbjct 1443 GATGATCCCTACCTTATTGACCGCAACTTCCGTT--TTTATTATCGCATTCATTGCTGCT 1386 Query 150956 CCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAAC 151015 || || || || || ||||| || |||||||| ||| |||| ||||| | ||||| ||| Sbjct 1385 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 1326 Query 151016 AACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCC 151075 || || || || ||||| || ||||| ||||| ||||| ||| |||| || || || Sbjct 1325 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCG 1266 Query 151076 ATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 151135 ||||||||||| || || | ||||||||||| |||||||| ||||||| |||| || Sbjct 1265 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 1206 Query 151136 GTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTAC 151195 || | ||||| | ||||| | | ||| |||||||||||||||||||| || | Sbjct 1205 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1146 Query 151196 CGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAG 151254 || ||||||||||||| ||||| ||| |||||||| || ||||| ||||| ||||| | Sbjct 1145 CGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAAC 1087 Query 151255 TGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGG 151314 ||| || ||| | |||| || | |||||||| ||| ||||||| ||||| || || Sbjct 1086 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 1027 Query 151315 TATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCA 151374 || ||||| || ||||||| ||| |||| ||||| || |||||||||||||| ||||| Sbjct 1026 AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA 967 Query 151375 CCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCA 151434 ||| || || ||| | ||||| |||||||| ||||| || || || || || ||||| Sbjct 966 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 907 Query 151435 CGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTA 151494 ||||| |||| |||||| || | | || ||||| ||||| || || || | Sbjct 906 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 847 Query 151495 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTT 151554 |||||||| ||||| ||||||||||| || |||||||| || || || || ||||| || Sbjct 846 AGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTT 787 Query 151555 TGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 151614 ||| || | ||||||||||| ||| ||||||||||| ||||| | || |||||| | Sbjct 786 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 727 Query 151615 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATT 151674 || || ||||| || || ||||| ||||| ||||| | ||| | ||||||||||| || Sbjct 726 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTT 667 Query 151675 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAA 151734 |||||| || |||||||| |||||||| || | | ||| |||| || || | || Sbjct 666 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 607 Query 151735 CACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAA 151794 || ||||| || || | |||||||| || ||||||||||||||||| || ||||| Sbjct 606 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 547 Query 151795 TGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 151831 |||||||||||||||||| ||||| ||||||| |||| Sbjct 546 TGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510 Score = 627 bits (694), Expect = 9e-175 Identities = 749/1014 (74%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||| ||||||||||| ||||||||||| Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538 | || ||||||||||| || ||||| ||||||||| | || || || ||| | Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583 Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598 || || || ||||| ||||| || || | | | |||||| | || | || |||||| Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643 Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658 ||||| || ||||| ||||| | ||| ||| | || || || ||||||||||| Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703 Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 152717 || |||||||| |||||||| |||| ||||| ||| | || || |||||||| || || Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763 Query 152718 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 152777 || || | | || || || ||||| || || ||||||||||| || ||||||||||| Sbjct 32764 TCCGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32822 Query 152778 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 152837 | ||||| || || || || ||||||||||| ||||||| || || || ||| || Sbjct 32823 TTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32882 Query 152838 GGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAA 152897 || || || || || |||||| | ||||| | ||||| || || || ||||||||||| Sbjct 32883 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32942 Query 152898 TCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCA 152957 || |||||||||||||| || || ||| | |||| | || |||| | || ||||| Sbjct 32943 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCA 33002 Query 152958 TGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGC 153017 ||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| || Sbjct 33003 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33062 Query 153018 TTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 153077 ||| || ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 33063 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33122 Query 153078 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 153137 || || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 33123 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33182 Query 153138 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 153197 ||| || | ||| | |||| | || ||||| | | || || ||| | || || || Sbjct 33183 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 33242 Query 153198 TGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 153257 ||| || || || || || || |||||| | || | |||||||| ||||||||||| || Sbjct 33243 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33302 Query 153258 CTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCA 153317 |||||| || ||||| ||||| ||||||||| ||||||||||| |||| || || || Sbjct 33303 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33362 Query 153318 ACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||||||| ||| | | |||||||| ||||| | ||||| || |||||||| Sbjct 33363 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416 >seq218717 Length=448 Score = 136 bits (150), Expect = 4e-27 Identities = 163/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 151165 TTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGT 151224 ||| ||| |||||||||||||||| || | ||||||||||||| ||||| || Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGT 168 Query 151225 TGCATACTCTGCTCCAGTT-GCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283 |||||| || ||||| ||| || ||||| | || || ||| | | ||||| | |||| Sbjct 167 TGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTC 108 Query 151284 AAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTG 151343 |||| ||| | | ||| ||||| || || || ||| | || ||||||| || ||| Sbjct 107 AAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTG 48 Query 151344 TCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCA 151383 | ||||| || |||||||||||||| |||||||| || || Sbjct 47 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8 >seq134954 Length=2254 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 151993 AAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTT 152052 |||||||||| |||||||||||||| ||||| || ||||||||| || ||||||| Sbjct 107 AAGATGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTT 48 Query 152053 GTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGAT 152089 | | |||||||| |||||| |||| ||||||||||| Sbjct 47 GCAGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGAT 11 >seq207321 Length=8752 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048 || ||||| ||| ||| || | || || ||||| ||| ||| | ||| || ||| Sbjct 6156 TGCGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGATTTGCCTTAC 6215 Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108 || || ||| ||||| | || || || || ||||| | || ||| ||||| Sbjct 6216 TCATGCCGTTCTGGTTCTTGCTCTAGCTGCGCCGGTAAACTCGTCTCTGGCTTCGTTGAC 6275 Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168 ||| |||||| |||||||| || ||||| || ||| ||| | || | |||||| Sbjct 6276 CAGTCCGACCAAAGCTTCTTGGACGACGACCAAATGGAAGAAGGCTATGTCTTAACCTGT 6335 Query 152169 GTTGCATATCCAACTTCTGATGTCACC 152195 || || || |||||||||||||||||| Sbjct 6336 GTCGCTTACCCAACTTCTGATGTCACC 6362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547786468816160